The 2.0 version of rSNPBase

Variant report

Variant rs553169414
Chromosome Location chr11:45123959-45123960
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:45114800-45124200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
2 chr11:45117000-45124000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr11:45117000-45124000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr11:45117000-45126400 Weak transcription Thymus Thymus
5 chr11:45119800-45124200 Weak transcription Pancreas Pancrea
6 chr11:45120000-45124000 Weak transcription Lung lung
7 chr11:45120000-45124200 Weak transcription Esophagus oesophagus
8 chr11:45120000-45124200 Weak transcription Right Atrium heart
9 chr11:45120200-45124000 Weak transcription HMEC breast
10 chr11:45120200-45124200 Weak transcription Right Ventricle heart
11 chr11:45120400-45124400 Weak transcription Breast Myoepithelial Primary Cells Breast
12 chr11:45121800-45124200 Enhancers Primary neutrophils fromperipheralblood blood
13 chr11:45122000-45124800 Enhancers Primary hematopoietic stem cells short term culture blood
14 chr11:45122200-45124000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr11:45122200-45124000 Weak transcription Fetal Brain Male brain
16 chr11:45122200-45125000 Enhancers Primary T helper cells PMA-I stimulated --
17 chr11:45122600-45124000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr11:45122600-45124200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
19 chr11:45122600-45124800 Enhancers Fetal Thymus thymus
20 chr11:45122800-45124200 Weak transcription ES-I3 Cell Line embryonic stem cell
21 chr11:45122800-45124200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr11:45122800-45124200 Weak transcription Fetal Brain Female brain
23 chr11:45123000-45125000 Enhancers Primary T helper naive cells fromperipheralblood blood
24 chr11:45123400-45125000 Enhancers Primary T killer memory cells from peripheral blood blood
25 chr11:45123400-45132200 Enhancers Fetal Muscle Leg muscle
26 chr11:45123600-45125200 Enhancers Primary Natural Killer cells fromperipheralblood blood
27 chr11:45123800-45124000 Flanking Active TSS Primary T cells fromperipheralblood blood
28 chr11:45123800-45124200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
29 chr11:45123800-45124200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
30 chr11:45123800-45124200 Enhancers Osteobl bone
31 chr11:45123800-45124400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
32 chr11:45123800-45124400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr11:45123800-45124400 Enhancers Primary B cells from cord blood blood
34 chr11:45123800-45124400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr11:45123800-45124600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr11:45123800-45124600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr11:45123800-45124600 Enhancers NHLF lung
38 chr11:45123800-45124800 Enhancers Primary hematopoietic stem cells blood
39 chr11:45123800-45124800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr11:45123800-45124800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr11:45123800-45124800 Bivalent Enhancer Adipose Nuclei Adipose
42 chr11:45123800-45124800 Enhancers Fetal Intestine Small intestine
43 chr11:45123800-45124800 Bivalent Enhancer Fetal Muscle Trunk muscle
44 chr11:45123800-45124800 Bivalent Enhancer Placenta Placenta
45 chr11:45123800-45124800 Bivalent Enhancer Fetal Stomach stomach
46 chr11:45123800-45124800 Enhancers Skeletal Muscle Female skeletal muscle
47 chr11:45123800-45124800 Enhancers Spleen Spleen
48 chr11:45123800-45124800 Enhancers NHEK skin
49 chr11:45123800-45125000 Enhancers Primary T helper naive cells from peripheral blood blood
50 chr11:45123800-45125000 Enhancers Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015