Variant report

Variant	rs553176797
Chromosome Location	chr3:157184901-157184902
allele	-/TGTGTGTGTGTGTA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157175083..157179044-chr3:157180593..157185169,5	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv963283	chr3:157183446-157186979	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157160400-157195000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:157161200-157186600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:157164600-157185400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:157170200-157187000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:157180200-157186000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:157180400-157185400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:157180800-157186000	Enhancers	NHDF-Ad	bronchial
8	chr3:157181000-157186400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:157182200-157185400	Weak transcription	Lung	lung
10	chr3:157182400-157185000	Weak transcription	HSMMtube	muscle
11	chr3:157182800-157190400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr3:157183000-157185400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:157183000-157188400	Weak transcription	Fetal Stomach	stomach
14	chr3:157184200-157187000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr3:157184400-157185600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr3:157184400-157190400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:157184600-157185000	Genic enhancers	NH-A	brain
18	chr3:157184600-157185800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr3:157184600-157186000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:157184600-157186000	Genic enhancers	Osteobl	bone
21	chr3:157184600-157186200	Genic enhancers	HUVEC	blood vessel
22	chr3:157184800-157185000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:157184800-157185600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:157184800-157185600	Enhancers	HSMM	muscle
25	chr3:157184800-157186000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:157184800-157186000	Enhancers	NHLF	lung

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