Variant report

Variant	rs553190061
Chromosome Location	chr19:44807132-44807133
allele	-/TATT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44762662..44765169-chr19:44806024..44808707,2	K562	blood:

Variant related genes	Relation type
ENSG00000159915	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329886	chr19:44806187-44808310	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv3323592	chr19:44806562-44807960	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44790400-44808400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:44792400-44807600	Weak transcription	HUVEC	blood vessel
3	chr19:44792800-44807600	Weak transcription	NH-A	brain
4	chr19:44792800-44808400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr19:44794600-44807600	Strong transcription	Primary B cells from cord blood	blood
6	chr19:44798400-44807400	Strong transcription	Dnd41	blood
7	chr19:44799600-44807600	Strong transcription	Skeletal Muscle Female	skeletal muscle
8	chr19:44799800-44807400	Weak transcription	K562	blood
9	chr19:44799800-44807600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr19:44801000-44807600	Strong transcription	Skeletal Muscle Male	skeletal muscle
11	chr19:44801400-44807400	Weak transcription	NHLF	lung
12	chr19:44801400-44807600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr19:44801400-44807600	Weak transcription	HSMM	muscle
14	chr19:44802200-44807600	Strong transcription	Fetal Stomach	stomach
15	chr19:44802600-44807400	Weak transcription	HMEC	breast
16	chr19:44802800-44807600	Weak transcription	Psoas Muscle	Psoas
17	chr19:44802800-44807600	Weak transcription	Stomach Mucosa	stomach
18	chr19:44803200-44807400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr19:44803800-44807600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr19:44804000-44807600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr19:44804000-44807600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr19:44804000-44807600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr19:44804000-44807800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr19:44804000-44808400	Weak transcription	Esophagus	oesophagus
25	chr19:44804200-44807800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr19:44804200-44808000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr19:44804200-44808200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr19:44804400-44807200	Strong transcription	Ovary	ovary
29	chr19:44804400-44807400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr19:44804400-44807400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr19:44804400-44807400	Weak transcription	HepG2	liver
32	chr19:44804400-44807400	Weak transcription	NHEK	skin
33	chr19:44804400-44807600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr19:44804400-44807600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr19:44804400-44807600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr19:44804400-44807600	Weak transcription	Fetal Brain Male	brain
37	chr19:44804400-44807600	Weak transcription	Fetal Heart	heart
38	chr19:44804400-44807600	Weak transcription	HSMMtube	muscle
39	chr19:44804400-44807600	Weak transcription	Osteobl	bone
40	chr19:44804400-44807800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr19:44804400-44807800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr19:44804400-44808000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr19:44804400-44808400	Weak transcription	Right Ventricle	heart
44	chr19:44804400-44808600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr19:44804400-44808600	Weak transcription	Spleen	Spleen
46	chr19:44804600-44807400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr19:44804600-44807400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr19:44804600-44807600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr19:44804600-44807600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr19:44804600-44807600	Weak transcription	Brain Angular Gyrus	brain

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