Variant report

Variant	rs553206709
Chromosome Location	chr12:63215310-63215311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401870	chr12:63215053-63228223	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63195800-63228600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:63196000-63225800	Weak transcription	Gastric	stomach
3	chr12:63207200-63221000	Weak transcription	HepG2	liver
4	chr12:63207200-63228600	Weak transcription	A549	lung
5	chr12:63207200-63231200	Weak transcription	Pancreas	Pancrea
6	chr12:63207400-63219400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr12:63211800-63228000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:63211800-63228200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:63211800-63228200	Weak transcription	Aorta	Aorta
10	chr12:63212000-63225600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr12:63212000-63228200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr12:63212200-63222800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr12:63212200-63223200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:63212200-63227800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr12:63212400-63224400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr12:63212400-63224600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr12:63212400-63228200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr12:63212400-63228200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr12:63212400-63228400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr12:63212400-63228600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr12:63212400-63228800	Weak transcription	Brain Anterior Caudate	brain
22	chr12:63212400-63229000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr12:63212600-63221200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr12:63212600-63221600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr12:63212600-63221600	Weak transcription	Brain Angular Gyrus	brain
26	chr12:63212600-63227200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr12:63212600-63234600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr12:63212800-63222000	Weak transcription	Left Ventricle	heart
29	chr12:63213800-63225200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr12:63214000-63228400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr12:63214400-63224400	Weak transcription	Fetal Intestine Small	intestine
32	chr12:63214800-63227800	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links