Variant report

Variant	rs553221261
Chromosome Location	chr4:147207019-147207020
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3332743	chr4:147204602-147209500	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3425492	chr4:147204802-147209400	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3429202	chr4:147205102-147209400	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3431014	chr4:147206206-147208023	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv822766	chr4:147206279-147208554	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv14226	chr4:147206826-147208457	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147164800-147207200	Weak transcription	Thymus	Thymus
2	chr4:147165000-147207200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr4:147165200-147207200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr4:147166000-147207800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:147166800-147207200	Weak transcription	Right Ventricle	heart
6	chr4:147167000-147207200	Weak transcription	Aorta	Aorta
7	chr4:147167000-147217600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:147167400-147209000	Weak transcription	Ovary	ovary
9	chr4:147174400-147231200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr4:147174800-147207800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr4:147174800-147218400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr4:147175400-147225400	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:147176800-147207200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:147177400-147213400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr4:147178200-147207800	Weak transcription	Primary B cells from cord blood	blood
16	chr4:147179000-147207200	Weak transcription	Fetal Stomach	stomach
17	chr4:147179200-147207200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:147179400-147217200	Weak transcription	Left Ventricle	heart
19	chr4:147179600-147214200	Weak transcription	Dnd41	blood
20	chr4:147180400-147233200	Weak transcription	Liver	Liver
21	chr4:147180600-147208200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr4:147182600-147207200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr4:147184000-147207200	Weak transcription	Lung	lung
24	chr4:147186600-147212800	Weak transcription	Psoas Muscle	Psoas
25	chr4:147188400-147215200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr4:147189200-147207600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr4:147194600-147207200	Weak transcription	Esophagus	oesophagus
28	chr4:147197200-147207200	Weak transcription	Pancreas	Pancrea
29	chr4:147197400-147213200	Weak transcription	K562	blood
30	chr4:147197600-147207200	Weak transcription	Fetal Intestine Large	intestine
31	chr4:147198000-147224000	Weak transcription	Fetal Intestine Small	intestine
32	chr4:147200800-147207400	Weak transcription	Fetal Kidney	kidney
33	chr4:147201000-147207200	Weak transcription	Fetal Lung	lung
34	chr4:147201000-147224800	Weak transcription	HMEC	breast
35	chr4:147201000-147225400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr4:147201000-147249600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr4:147201600-147209600	Weak transcription	NH-A	brain
38	chr4:147201600-147214600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr4:147204000-147220800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr4:147204200-147208400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr4:147204200-147208600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr4:147204200-147211400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr4:147204400-147208400	Weak transcription	NHEK	skin
44	chr4:147204600-147207200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr4:147204600-147209800	Weak transcription	Brain Substantia Nigra	brain
46	chr4:147205200-147207200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr4:147205400-147207400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr4:147205600-147207200	Weak transcription	Gastric	stomach
49	chr4:147205600-147207400	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr4:147205600-147207800	Weak transcription	Brain Angular Gyrus	brain

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