Variant report

Variant	rs553239129
Chromosome Location	chr4:152936046-152936047
allele	-/TGAAGC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv461679	chr4:152935555-152992741	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv595734	chr4:152935555-152992741	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152929600-152936600	Enhancers	Fetal Thymus	thymus
2	chr4:152932000-152942000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:152932200-152939600	Weak transcription	Fetal Heart	heart
4	chr4:152932200-152942000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:152934400-152936800	Enhancers	Primary T cells fromperipheralblood	blood
6	chr4:152934600-152936400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr4:152934800-152936200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr4:152934800-152936200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr4:152934800-152936400	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr4:152934800-152936400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr4:152934800-152936800	Enhancers	Primary B cells from peripheral blood	blood
12	chr4:152935000-152936200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr4:152935000-152936400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr4:152935000-152936400	Enhancers	Thymus	Thymus
15	chr4:152935000-152936400	Enhancers	Dnd41	blood
16	chr4:152935200-152936200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr4:152935200-152936200	Enhancers	Primary T cells from cord blood	blood
18	chr4:152935200-152936200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr4:152935200-152936200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr4:152935200-152936200	Flanking Active TSS	GM12878-XiMat	blood
21	chr4:152935200-152936400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr4:152935200-152936400	Enhancers	Spleen	Spleen
23	chr4:152935600-152936200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr4:152935600-152936600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr4:152936000-152936200	Flanking Active TSS	Primary B cells from cord blood	blood

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