Variant report

Variant	rs553269034
Chromosome Location	chr6:164174749-164174750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv520292	chr6:164174617-164190919	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164163200-164178400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164167800-164177200	Weak transcription	HSMM	muscle
3	chr6:164171800-164174800	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:164171800-164174800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:164171800-164176600	Weak transcription	Primary T cells from cord blood	blood
6	chr6:164172200-164185800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:164172400-164175000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:164172400-164176200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:164172400-164180400	Weak transcription	K562	blood
10	chr6:164172600-164178400	Weak transcription	Right Atrium	heart
11	chr6:164172800-164174800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:164172800-164176200	Weak transcription	Primary B cells from cord blood	blood
13	chr6:164173400-164174800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:164173400-164178400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr6:164174600-164175200	ZNF genes & repeats	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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