Variant report

Variant	rs553279883
Chromosome Location	chr9:21808638-21808639
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1026981	chr9:21748202-21811697	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
3	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv3450880	chr9:21808376-21808658	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21804000-21808800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr9:21804000-21810800	Weak transcription	Right Ventricle	heart
3	chr9:21804000-21814200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:21804000-21817600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:21804000-21838200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr9:21804200-21810800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr9:21804200-21813200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr9:21804200-21813200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr9:21804400-21808800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr9:21804400-21808800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr9:21804400-21813200	Weak transcription	Colonic Mucosa	Colon
12	chr9:21804400-21816000	Weak transcription	Fetal Kidney	kidney
13	chr9:21804600-21810400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:21804800-21813600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr9:21805000-21809000	Weak transcription	Adipose Nuclei	Adipose
16	chr9:21805000-21809000	Weak transcription	HSMMtube	muscle
17	chr9:21805000-21809800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:21805000-21809800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:21805000-21809800	Weak transcription	NHDF-Ad	bronchial
20	chr9:21805000-21810800	Weak transcription	Brain Anterior Caudate	brain
21	chr9:21805000-21811200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr9:21805000-21812000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:21805000-21813200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr9:21805000-21816200	Weak transcription	Fetal Brain Male	brain
25	chr9:21805200-21809000	Weak transcription	Fetal Lung	lung
26	chr9:21805200-21810000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr9:21805200-21810800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr9:21805200-21810800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr9:21805200-21812800	Strong transcription	Fetal Stomach	stomach
30	chr9:21805200-21813200	Weak transcription	Psoas Muscle	Psoas
31	chr9:21805200-21813400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr9:21805400-21812600	Strong transcription	Fetal Intestine Large	intestine
33	chr9:21805600-21810200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr9:21805800-21809000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:21805800-21809200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr9:21805800-21813200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr9:21805800-21813200	Weak transcription	Brain Angular Gyrus	brain
38	chr9:21806000-21808800	Weak transcription	HSMM	muscle
39	chr9:21806000-21809200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr9:21806000-21812400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr9:21806000-21812600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr9:21806000-21817600	Genic enhancers	HMEC	breast
43	chr9:21806200-21808800	Weak transcription	Small Intestine	intestine
44	chr9:21806200-21809800	Strong transcription	NHEK	skin
45	chr9:21806200-21810000	Weak transcription	Fetal Brain Female	brain
46	chr9:21806200-21813200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr9:21806400-21808800	Genic enhancers	GM12878-XiMat	blood
48	chr9:21806400-21812200	Strong transcription	Fetal Intestine Small	intestine
49	chr9:21806400-21812400	Strong transcription	HepG2	liver
50	chr9:21806400-21812800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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