Variant report

Variant	rs553280856
Chromosome Location	chr11:17782065-17782066
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17781823..17782570-chr11:18001193..18001905,2	MCF-7	breast:
2	chr11:17781843..17782605-chr11:17868062..17868630,2	MCF-7	breast:
3	chr11:17778611..17780573-chr11:17781418..17783922,2	K562	blood:
4	chr11:17781862..17782597-chr11:17994721..17995346,2	K562	blood:
5	chr11:17769238..17771607-chr11:17779598..17782123,2	K562	blood:
6	chr11:17781589..17782577-chr11:17885405..17886255,2	K562	blood:
7	chr11:17782031..17782545-chr11:17865700..17866358,2	MCF-7	breast:
8	chr11:17781047..17783603-chr11:17891179..17893367,2	K562	blood:
9	chr11:17781698..17782597-chr11:18001016..18002078,5	K562	blood:
10	chr11:17757319..17757897-chr11:17781730..17782258,2	K562	blood:
11	chr11:17781854..17784746-chr11:17785272..17786871,2	MCF-7	breast:
12	chr11:17782032..17782544-chr11:17801368..17801871,2	MCF-7	breast:
13	chr11:17781836..17782575-chr11:17999957..18000865,3	MCF-7	breast:
14	chr11:17781701..17782562-chr11:17868027..17868986,3	MCF-7	breast:
15	chr11:17781608..17782534-chr11:17926929..17928261,6	MCF-7	breast:
16	chr11:17781658..17782593-chr11:18000009..18000810,4	MCF-7	breast:
17	chr11:17781544..17782571-chr11:17999973..18000867,4	K562	blood:
18	chr11:17781675..17782374-chr11:17994338..17995285,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467717	chr11:17713507-17791822	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv553588	chr11:17713507-17791822	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv825772	chr11:17723530-17783128	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1038119	chr11:17744915-17794577	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv467718	chr11:17744992-17809724	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv553589	chr11:17744992-17809724	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	esv1793678	chr11:17745099-17786436	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv516767	chr11:17758587-17809724	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
9	nsv832078	chr11:17780503-17953521	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv1043973	chr11:17781560-17869896	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17771200-17782200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:17772400-17786800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:17772400-17790600	Weak transcription	Right Atrium	heart
4	chr11:17773400-17795600	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:17774000-17786000	Weak transcription	Gastric	stomach
6	chr11:17774000-17791600	Weak transcription	Pancreas	Pancrea
7	chr11:17776400-17785800	Weak transcription	Brain Angular Gyrus	brain
8	chr11:17777400-17782200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:17781000-17786400	Weak transcription	Brain Germinal Matrix	brain
10	chr11:17781800-17782200	Enhancers	Fetal Brain Female	brain
11	chr11:17781800-17782200	Enhancers	GM12878-XiMat	blood
12	chr11:17781800-17783400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr11:17782000-17782200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr11:17782000-17782200	Active TSS	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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