Variant report

Variant	rs553285730
Chromosome Location	chr4:82135258-82135259
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3356500	chr4:82134953-82137501	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82132200-82136200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:82132800-82135400	Active TSS	Fetal Intestine Large	intestine
3	chr4:82133200-82136000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:82134200-82135400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
5	chr4:82134200-82136600	Active TSS	NHDF-Ad	bronchial
6	chr4:82134400-82137200	Active TSS	NHLF	lung
7	chr4:82134600-82135800	Bivalent/Poised TSS	Fetal Brain Male	brain
8	chr4:82134600-82137000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
9	chr4:82134800-82135400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
10	chr4:82134800-82135600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr4:82134800-82135800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:82134800-82136400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:82134800-82136800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:82135000-82135600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:82135000-82135600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
16	chr4:82135000-82135600	Bivalent Enhancer	Brain Hippocampus Middle	brain
17	chr4:82135000-82136800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:82135200-82135400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:82135200-82135400	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
20	chr4:82135200-82135600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:82135200-82135600	Flanking Active TSS	Fetal Brain Female	brain
22	chr4:82135200-82136400	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
23	chr4:82135200-82136600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
24	chr4:82135200-82137200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
25	chr4:82135200-82137200	Active TSS	Rectal Smooth Muscle	rectum

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