Variant report

Variant	rs553287846
Chromosome Location	chr16:30427738-30427739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:30426230..30430771-chr16:30440207..30443266,5	K562	blood:
2	chr16:30367168..30369191-chr16:30427259..30429781,3	MCF-7	breast:
3	chr16:30133035..30135349-chr16:30425863..30428832,2	MCF-7	breast:
4	chr16:30100427..30103235-chr16:30427361..30429315,2	MCF-7	breast:
5	chr16:30427326..30429415-chr16:30670296..30671867,2	MCF-7	breast:
6	chr16:30124184..30126989-chr16:30425859..30428488,3	K562	blood:
7	chr16:30388796..30390827-chr16:30426623..30428713,2	MCF-7	breast:
8	chr16:30425958..30428339-chr16:30429435..30431595,3	K562	blood:
9	chr16:30427103..30429593-chr16:30455374..30458526,5	MCF-7	breast:
10	chr16:30427599..30430058-chr16:30620615..30623502,2	MCF-7	breast:
11	chr16:30387643..30390000-chr16:30427735..30430082,2	MCF-7	breast:
12	chr16:30382519..30385051-chr16:30425815..30427953,2	K562	blood:
13	chr16:30378643..30380815-chr16:30427484..30429569,2	MCF-7	breast:
14	chr16:30122802..30125684-chr16:30426687..30428488,2	K562	blood:
15	chr16:30427113..30429104-chr16:30669120..30671415,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000179918	Chromatin interaction
ENSG00000180209	Chromatin interaction
ENSG00000156853	Chromatin interaction
ENSG00000169221	Chromatin interaction
ENSG00000102882	Chromatin interaction
ENSG00000102886	Chromatin interaction
ENSG00000199787	Chromatin interaction
ENSG00000156860	Chromatin interaction
ENSG00000149922	Chromatin interaction
ENSG00000179958	Chromatin interaction
ENSG00000180035	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065915	chr16:29967090-30486120	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	229 gene(s)	inside rSNPs	diseases
2	nsv542897	chr16:29967090-30486120	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	229 gene(s)	inside rSNPs	diseases
3	nsv1056897	chr16:30363683-30457504	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv905724	chr16:30368591-30438930	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
5	nsv532531	chr16:30370550-30581820	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
6	nsv827612	chr16:30371538-30429862	Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
7	esv3394301	chr16:30426951-30431549	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30419200-30428800	Weak transcription	Small Intestine	intestine
2	chr16:30419600-30428600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr16:30419800-30428600	Weak transcription	Esophagus	oesophagus
4	chr16:30419800-30428800	Weak transcription	Gastric	stomach
5	chr16:30420000-30428800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr16:30421000-30428200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr16:30421000-30428400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr16:30421200-30428200	Weak transcription	Primary B cells from cord blood	blood
9	chr16:30421200-30428200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr16:30421200-30428200	Weak transcription	Fetal Brain Male	brain
11	chr16:30421200-30428200	Weak transcription	Placenta	Placenta
12	chr16:30421200-30428200	Weak transcription	Spleen	Spleen
13	chr16:30421200-30428200	Weak transcription	NHDF-Ad	bronchial
14	chr16:30421200-30428400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr16:30421200-30428400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr16:30421200-30428400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr16:30421200-30428600	Weak transcription	Colonic Mucosa	Colon
18	chr16:30421200-30437600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr16:30421200-30437600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr16:30421400-30428200	Weak transcription	Primary B cells from peripheral blood	blood
21	chr16:30421400-30428200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr16:30421400-30428200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr16:30421400-30428200	Weak transcription	Colon Smooth Muscle	Colon
24	chr16:30421400-30428200	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr16:30421400-30428400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr16:30421400-30428400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr16:30421400-30428400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr16:30421400-30428600	Weak transcription	Hela-S3	cervix
29	chr16:30421400-30428800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr16:30422000-30428400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr16:30422000-30428600	Weak transcription	Stomach Mucosa	stomach
32	chr16:30422200-30428200	Strong transcription	Fetal Stomach	stomach
33	chr16:30423200-30428600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr16:30423400-30428200	Weak transcription	Fetal Brain Female	brain
35	chr16:30423400-30428400	Weak transcription	Fetal Lung	lung
36	chr16:30423400-30428600	Weak transcription	Fetal Kidney	kidney
37	chr16:30423400-30428600	Weak transcription	Right Ventricle	heart
38	chr16:30423600-30428200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr16:30423600-30428200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr16:30423600-30428400	Weak transcription	HUVEC	blood vessel
41	chr16:30423600-30428600	Weak transcription	Aorta	Aorta
42	chr16:30423600-30428600	Weak transcription	HMEC	breast
43	chr16:30423800-30428000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr16:30423800-30428400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr16:30423800-30428400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr16:30423800-30428400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr16:30423800-30428400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr16:30423800-30428600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr16:30423800-30428600	Weak transcription	Lung	lung
50	chr16:30423800-30428600	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links