Variant report

Variant	rs553316542
Chromosome Location	chr5:124233371-124233372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3324715	chr5:124233278-124235826	ZNF genes & repeats Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
2	esv3427099	chr5:124233328-124236251	ZNF genes & repeats Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124223200-124242200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:124225800-124237800	Weak transcription	Fetal Lung	lung
3	chr5:124233000-124233400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:124233000-124233400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:124233000-124233800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:124233200-124233400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
7	chr5:124233200-124233400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links