Variant report

Variant	rs553316745
Chromosome Location	chr4:79859709-79859710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79471198..79473938-chr4:79857809..79860687,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138772	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879504	chr4:79759796-79874275	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv3392523	chr4:79859553-79862101	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79833000-79859800	Weak transcription	Esophagus	oesophagus
2	chr4:79833000-79859800	Weak transcription	Right Ventricle	heart
3	chr4:79833600-79859800	Weak transcription	Placenta	Placenta
4	chr4:79845800-79860000	Weak transcription	Small Intestine	intestine
5	chr4:79850800-79859800	Weak transcription	Left Ventricle	heart
6	chr4:79850800-79859800	Weak transcription	Pancreas	Pancrea
7	chr4:79850800-79860000	Weak transcription	Gastric	stomach
8	chr4:79850800-79860000	Weak transcription	Lung	lung
9	chr4:79850800-79860000	Weak transcription	Spleen	Spleen
10	chr4:79854000-79859800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:79858000-79859800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:79858000-79859800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr4:79858600-79859800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr4:79858600-79860000	Flanking Active TSS	Dnd41	blood
15	chr4:79858800-79859800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr4:79858800-79860200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:79859000-79859800	Flanking Active TSS	Brain Germinal Matrix	brain
18	chr4:79859000-79860000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:79859000-79860000	Flanking Active TSS	Rectal Smooth Muscle	rectum
20	chr4:79859000-79860400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:79859000-79860800	Active TSS	GM12878-XiMat	blood
22	chr4:79859200-79859800	Enhancers	Primary B cells from cord blood	blood
23	chr4:79859200-79859800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr4:79859200-79859800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr4:79859200-79859800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr4:79859200-79859800	Enhancers	Fetal Muscle Leg	muscle
27	chr4:79859200-79859800	Enhancers	Fetal Stomach	stomach
28	chr4:79859200-79859800	Flanking Active TSS	K562	blood
29	chr4:79859200-79859800	Flanking Active TSS	Osteobl	bone
30	chr4:79859200-79860000	Enhancers	Fetal Heart	heart
31	chr4:79859200-79860200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr4:79859200-79860200	Flanking Active TSS	HUVEC	blood vessel
33	chr4:79859200-79861000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
34	chr4:79859200-79861000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr4:79859200-79861200	Active TSS	H9 Cell Line	embryonic stem cell
36	chr4:79859200-79861200	Active TSS	NHLF	lung
37	chr4:79859200-79861400	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr4:79859200-79861400	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr4:79859400-79859800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:79859400-79859800	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr4:79859400-79859800	Active TSS	Stomach Smooth Muscle	stomach
42	chr4:79859400-79860000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:79859400-79860000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr4:79859400-79860000	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr4:79859400-79860000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
46	chr4:79859400-79860000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
47	chr4:79859400-79860000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr4:79859400-79860000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr4:79859400-79860000	Flanking Active TSS	HMEC	breast
50	chr4:79859400-79860800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell

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