Variant report

Variant	rs553320124
Chromosome Location	chr7:129380997-129380998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129380254..129382975-chr7:129414293..129416363,2	K562	blood:
2	chr7:129372539..129374355-chr7:129379814..129381363,2	MCF-7	breast:
3	chr7:129379929..129382728-chr7:129402086..129404067,3	K562	blood:
4	chr7:129374523..129378775-chr7:129380102..129386585,8	K562	blood:
5	chr7:129380203..129383393-chr7:129464866..129467037,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207691	Chromatin interaction
ENSG00000199158	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1813824	chr7:129379450-129424461	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	364 gene(s)	inside rSNPs	diseases
2	esv14232	chr7:129379923-129445465	Flanking Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	365 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129339200-129381800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:129348200-129392000	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr7:129351600-129394800	Weak transcription	Hela-S3	cervix
4	chr7:129357000-129392400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:129360600-129394800	Weak transcription	Small Intestine	intestine
6	chr7:129361800-129392400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr7:129362200-129381200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:129362200-129387800	Strong transcription	Liver	Liver
9	chr7:129364200-129397600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr7:129365200-129388400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:129366800-129399400	Weak transcription	Fetal Kidney	kidney
12	chr7:129369600-129399400	Weak transcription	Fetal Brain Male	brain
13	chr7:129372000-129381000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:129372000-129383400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr7:129372000-129390000	Weak transcription	HMEC	breast
16	chr7:129372200-129381000	Weak transcription	HepG2	liver
17	chr7:129372200-129381600	Weak transcription	Fetal Brain Female	brain
18	chr7:129372200-129387000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:129372200-129390000	Weak transcription	NHEK	skin
20	chr7:129372200-129397800	Weak transcription	NH-A	brain
21	chr7:129372400-129398800	Weak transcription	NHLF	lung
22	chr7:129373200-129381000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:129373400-129389200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr7:129373600-129381000	Strong transcription	Fetal Muscle Trunk	muscle
25	chr7:129373600-129385600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr7:129373800-129385200	Strong transcription	Duodenum Mucosa	Duodenum
27	chr7:129373800-129392000	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr7:129374600-129394800	Weak transcription	Gastric	stomach
29	chr7:129374800-129386600	Weak transcription	Esophagus	oesophagus
30	chr7:129374800-129390000	Weak transcription	Colonic Mucosa	Colon
31	chr7:129375000-129381400	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr7:129375000-129386600	Weak transcription	GM12878-XiMat	blood
33	chr7:129375000-129390000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr7:129375000-129391600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr7:129375000-129394800	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr7:129375000-129395400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr7:129375600-129381400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr7:129375800-129392000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr7:129376400-129381000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr7:129376600-129384600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr7:129376600-129393000	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr7:129376600-129397200	Strong transcription	Dnd41	blood
43	chr7:129376800-129381200	Strong transcription	Primary B cells from peripheral blood	blood
44	chr7:129376800-129383600	Enhancers	Fetal Heart	heart
45	chr7:129376800-129392200	Strong transcription	Primary T cells from cord blood	blood
46	chr7:129377000-129382200	Strong transcription	Primary B cells from cord blood	blood
47	chr7:129377000-129387800	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr7:129377200-129387200	Strong transcription	Fetal Stomach	stomach
49	chr7:129377200-129392800	Strong transcription	Thymus	Thymus
50	chr7:129377400-129382200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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