Variant report

Variant	rs553324918
Chromosome Location	chr1:73446147-73446148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv945881	chr1:73446047-73452705	Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73442200-73447600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:73443000-73451200	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr1:73443000-73451800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:73444200-73447400	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr1:73445200-73446200	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr1:73445200-73446200	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr1:73445600-73446200	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr1:73446000-73446600	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr1:73446000-73451200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links