Variant report

Variant	rs553332643
Chromosome Location	chr11:19231012-19231013
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1041249	chr11:19229878-19248268	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19228600-19231200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:19229200-19231200	Weak transcription	Right Ventricle	heart
3	chr11:19229400-19240200	Weak transcription	Left Ventricle	heart
4	chr11:19229400-19244800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:19229600-19245000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:19230400-19231200	Flanking Active TSS	Fetal Heart	heart
7	chr11:19230400-19231400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:19230400-19231600	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr11:19230400-19231600	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr11:19230600-19231200	Enhancers	Psoas Muscle	Psoas
11	chr11:19230600-19231600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:19230600-19231600	Enhancers	Fetal Lung	lung
13	chr11:19230600-19231800	Enhancers	Placenta Amnion	Placenta Amnion
14	chr11:19230800-19231200	Flanking Active TSS	HSMMtube	muscle
15	chr11:19230800-19231600	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:19230800-19231600	Enhancers	Fetal Muscle Leg	muscle
17	chr11:19230800-19231600	Bivalent Enhancer	HSMM	muscle
18	chr11:19231000-19231200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:19231000-19231600	Enhancers	Placenta	Placenta
20	chr11:19231000-19231600	Enhancers	Gastric	stomach
21	chr11:19231000-19232000	Active TSS	Right Atrium	heart

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