Variant report

Variant	rs553362180
Chromosome Location	chr5:147603936-147603937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr5:147603682-147604114	Hela-S3	cervix:	n/a	n/a
2	GTF2F1	chr5:147603468-147604069	Hela-S3	cervix:	n/a	n/a
3	MYC	chr5:147603554-147604003	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr5:147603501-147604405	MCF10A-Er-Src	breast:	n/a	n/a
5	TBP	chr5:147603052-147604411	Hela-S3	cervix:	n/a	n/a
6	E2F4	chr5:147603749-147604403	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr5:147603512-147604339	MCF10A-Er-Src	breast:	n/a	n/a
8	BRCA1	chr5:147603608-147604422	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr5:147603504-147604008	Hela-S3	cervix:	n/a	n/a
10	POLR2A	chr5:147603442-147604578	Hela-S3	cervix:	n/a	n/a
11	STAT3	chr5:147603525-147604447	Hela-S3	cervix:	n/a	n/a
12	STAT3	chr5:147603655-147604150	MCF10A-Er-Src	breast:	n/a	n/a
13	FOS	chr5:147603670-147604262	MCF10A-Er-Src	breast:	n/a	n/a
14	CEBPB	chr5:147603542-147604483	Hela-S3	cervix:	n/a	chr5:147604236-147604247
15	EP300	chr5:147603493-147604416	Hela-S3	cervix:	n/a	chr5:147604184-147604191 chr5:147604204-147604218 chr5:147603933-147603940
16	POLR2A	chr5:147603483-147604270	Hela-S3	cervix:	n/a	n/a
17	FOS	chr5:147603729-147604002	MCF10A-Er-Src	breast:	n/a	n/a
18	STAT3	chr5:147603515-147604432	MCF10A-Er-Src	breast:	n/a	n/a
19	PRDM1	chr5:147603633-147604131	Hela-S3	cervix:	n/a	n/a
20	MAFK	chr5:147603475-147604476	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr5:147603540-147604150	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr5:147602992-147604354	Hela-S3	cervix:	n/a	n/a
23	POLR2A	chr5:147603205-147604591	MCF10A-Er-Src	breast:	n/a	n/a
24	RFX5	chr5:147603490-147604444	Hela-S3	cervix:	n/a	chr5:147603641-147603655
25	FOS	chr5:147603510-147604326	MCF10A-Er-Src	breast:	n/a	n/a
26	STAT3	chr5:147603514-147604338	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147569510..147572351-chr5:147602489..147604362,3	K562	blood:
2	chr5:147602522..147604396-chr5:147607993..147610533,2	K562	blood:

Variant related genes	Relation type
HMGN1P16	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv3349775	chr5:147603659-147606857	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147594000-147604400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:147603400-147604000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:147603400-147604600	Enhancers	NHEK	skin
4	chr5:147603800-147605800	Enhancers	Hela-S3	cervix

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