Variant report

Variant	rs553365298
Chromosome Location	chr3:112118860-112118861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877341	chr3:112079277-112125521	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1002567	chr3:112088498-112144063	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2830128	chr3:112090292-112144026	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv591294	chr3:112091220-112208750	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1010208	chr3:112098542-112227212	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv997659	chr3:112099148-112135687	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3463780	chr3:112118262-112124060	Enhancers Active TSS Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	n/a
8	esv3463781	chr3:112118262-112124060	Weak transcription Flanking Active TSS Enhancers Active TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112111400-112120400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:112111800-112125400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:112113400-112124600	Weak transcription	HMEC	breast
4	chr3:112113600-112120600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:112115000-112121200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr3:112115200-112127600	Weak transcription	Fetal Kidney	kidney
7	chr3:112116400-112126800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:112116600-112119800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr3:112116600-112121200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:112117000-112119200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:112117000-112124800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:112117000-112125600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:112117800-112120800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:112118000-112119200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:112118400-112123200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr3:112118600-112119000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr3:112118600-112119000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr3:112118600-112119000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr3:112118600-112119800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr3:112118600-112119800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:112118600-112119800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr3:112118600-112124000	Weak transcription	Placenta	Placenta
23	chr3:112118600-112130400	Weak transcription	H9 Cell Line	embryonic stem cell

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