Variant report

Variant	rs553369950
Chromosome Location	chr10:43572123-43572124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3A	chr10:43571816-43572857	H1-hESC	embryonic stem cell:	n/a	chr10:43572834-43572845 chr10:43572537-43572548
2	RAD21	chr10:43571764-43572207	H1-hESC	embryonic stem cell:	n/a	chr10:43571957-43571971 chr10:43571767-43571781
3	MAX	chr10:43571921-43572144	NB4	blood:	n/a	n/a
4	ZNF143	chr10:43571982-43572190	H1-hESC	embryonic stem cell:	n/a	n/a
5	RAD21	chr10:43570033-43576591	SK-N-SH	brain:	n/a	chr10:43574533-43574552 chr10:43570294-43570313 chr10:43575408-43575422 chr10:43574218-43574232 chr10:43571957-43571971 chr10:43572804-43572817 chr10:43570298-43570308 chr10:43571767-43571781 chr10:43570296-43570308
6	MXI1	chr10:43570976-43576611	SK-N-SH	brain:	n/a	chr10:43571222-43571231
7	CTCF	chr10:43572000-43572150	BE2_C	brain:	n/a	n/a
8	HA-E2F1	chr10:43571683-43572274	MCF-7	breast:	n/a	chr10:43571934-43571946 chr10:43572031-43572040 chr10:43571937-43571946
9	MAX	chr10:43571799-43572924	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43363801..43367756-chr10:43571423..43575718,4	MCF-7	breast:

Variant related genes	Relation type
RET	TF binding region
ENSG00000234944	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	nsv1038102	chr10:43441601-43642908	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv466880	chr10:43452436-43616751	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
7	nsv550695	chr10:43452436-43616751	Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
8	nsv895082	chr10:43530071-43755506	Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv895083	chr10:43549708-43765485	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
10	nsv1041297	chr10:43550567-43591057	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
11	nsv1044759	chr10:43550567-43591617	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
12	nsv1045690	chr10:43550567-43592346	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
13	nsv1039890	chr10:43552895-43589758	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
14	nsv1046759	chr10:43552895-43591617	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
15	nsv1043295	chr10:43552895-43599363	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv1051701	chr10:43555542-43642895	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
17	nsv1037488	chr10:43562033-43589927	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
18	nsv1052136	chr10:43562033-43590140	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
19	nsv1040509	chr10:43562033-43590649	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
20	nsv1040359	chr10:43562033-43591617	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
21	nsv1050241	chr10:43562033-43592346	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
22	nsv1050305	chr10:43568887-43591057	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
23	nsv1051646	chr10:43569959-43591174	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
24	nsv1038706	chr10:43569959-43591617	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
25	esv3405170	chr10:43571371-43573919	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	esv3327000	chr10:43571771-43574319	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43571400-43572600	Bivalent Enhancer	Spleen	Spleen
2	chr10:43571400-43573400	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:43571600-43572200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:43571600-43572200	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
5	chr10:43571600-43572200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:43571600-43572200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:43571600-43573200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr10:43571600-43573400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:43571600-43573600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr10:43571600-43573600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
11	chr10:43571600-43573800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr10:43571800-43572200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:43571800-43572200	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
14	chr10:43571800-43572200	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr10:43571800-43572200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
16	chr10:43571800-43572200	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
17	chr10:43571800-43572200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:43571800-43572200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:43571800-43572200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
20	chr10:43571800-43572200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
21	chr10:43571800-43572200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
22	chr10:43571800-43572200	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
23	chr10:43571800-43572200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
24	chr10:43571800-43572200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
25	chr10:43571800-43572200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
26	chr10:43571800-43572200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
27	chr10:43571800-43572200	Bivalent Enhancer	Placenta	Placenta
28	chr10:43571800-43572200	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
29	chr10:43571800-43572200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
30	chr10:43571800-43572200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
31	chr10:43571800-43572400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
32	chr10:43571800-43572400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
33	chr10:43571800-43572600	Bivalent Enhancer	Lung	lung
34	chr10:43571800-43572800	Bivalent Enhancer	Fetal Brain Male	brain
35	chr10:43571800-43572800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
36	chr10:43571800-43573200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr10:43571800-43573200	Bivalent/Poised TSS	Right Ventricle	heart
38	chr10:43571800-43573200	Bivalent/Poised TSS	Thymus	Thymus
39	chr10:43571800-43573400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
40	chr10:43571800-43573400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr10:43571800-43573400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:43571800-43573400	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr10:43571800-43573600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
44	chr10:43571800-43573600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
45	chr10:43571800-43573600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
46	chr10:43571800-43573600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr10:43571800-43573600	Active TSS	Left Ventricle	heart
48	chr10:43571800-43573800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
49	chr10:43572000-43572200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:43572000-43572200	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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