Variant report

Variant	rs553389490
Chromosome Location	chr3:140770899-140770900
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140766170..140768825-chr3:140770762..140772841,2	MCF-7	breast:
2	chr17:33477684..33478239-chr3:140770419..140770939,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432488	chr3:140752302-140790302	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3342822	chr3:140769087-140772135	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv591889	chr3:140769896-140778138	Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140769400-140771000	Bivalent/Poised TSS	NHEK	skin
2	chr3:140769400-140771200	Active TSS	H9 Cell Line	embryonic stem cell
3	chr3:140769400-140771200	Active TSS	Fetal Brain Female	brain
4	chr3:140769400-140771400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
5	chr3:140769400-140771600	Bivalent Enhancer	Spleen	Spleen
6	chr3:140769400-140771800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:140769400-140772200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:140769400-140772400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:140769400-140772600	Active TSS	Fetal Kidney	kidney
10	chr3:140769600-140771000	Active TSS	H1 Cell Line	embryonic stem cell
11	chr3:140769600-140771000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:140769600-140771000	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr3:140769600-140771000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
14	chr3:140769600-140771000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
15	chr3:140769600-140771000	Bivalent/Poised TSS	Brain Substantia Nigra	brain
16	chr3:140769600-140771000	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
17	chr3:140769600-140771200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:140769600-140771200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
19	chr3:140769600-140771200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:140769600-140771200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:140769600-140771400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr3:140769600-140771400	Bivalent/Poised TSS	A549	lung
23	chr3:140769600-140771600	Active TSS	Pancreas	Pancrea
24	chr3:140769600-140771800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:140769600-140772000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr3:140769600-140772000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
27	chr3:140769600-140772000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:140769600-140772000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:140769600-140772000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
30	chr3:140769600-140772000	Active TSS	Left Ventricle	heart
31	chr3:140769600-140772000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
32	chr3:140769600-140772200	Active TSS	Right Atrium	heart
33	chr3:140769800-140771000	Active TSS	HUES64 Cell Line	embryonic stem cell
34	chr3:140769800-140771000	Active TSS	iPS-15b Cell Line	embryonic stem cell
35	chr3:140769800-140771000	Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr3:140769800-140771000	Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr3:140769800-140771000	Active TSS	Psoas Muscle	Psoas
38	chr3:140769800-140771800	Active TSS	Aorta	Aorta
39	chr3:140769800-140772000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr3:140769800-140772000	Bivalent/Poised TSS	Brain Angular Gyrus	brain
41	chr3:140769800-140772000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
42	chr3:140769800-140772600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr3:140770000-140771000	Active TSS	Cortex derived primary cultured neurospheres	brain
44	chr3:140770000-140771000	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr3:140770000-140771000	Bivalent/Poised TSS	Fetal Stomach	stomach
46	chr3:140770000-140771000	Flanking Bivalent TSS/Enh	Placenta Amnion	Placenta Amnion
47	chr3:140770000-140771000	Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr3:140770000-140771200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
49	chr3:140770000-140771200	Active TSS	HSMMtube	muscle
50	chr3:140770000-140772000	Active TSS	ES-I3 Cell Line	embryonic stem cell

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