Variant report

Variant	rs553397538
Chromosome Location	chr11:85888127-85888128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85887077..85889450-chr11:85892380..85895254,3	MCF-7	breast:
2	chr11:85887352..85890234-chr11:85905723..85909475,3	K562	blood:
3	chr11:85853396..85856264-chr11:85887002..85888744,3	K562	blood:
4	chr11:85868596..85870226-chr11:85886997..85889880,2	K562	blood:

Variant related genes	Relation type
ENSG00000254502	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv2757460	chr11:85869944-85905513	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759846	chr11:85869944-85905513	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1040400	chr11:85883303-85898809	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1043422	chr11:85883840-85898809	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv1049658	chr11:85885461-85898809	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv1049881	chr11:85885684-85898809	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv555645	chr11:85886994-85898770	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv2760233	chr11:85887957-85899812	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85882600-85890800	Enhancers	Placenta	Placenta
2	chr11:85882600-85891600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr11:85883200-85891400	Weak transcription	Thymus	Thymus
4	chr11:85883400-85888200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:85883400-85888800	Enhancers	HMEC	breast
6	chr11:85883600-85888800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:85883600-85889000	Enhancers	Osteobl	bone
8	chr11:85883800-85890400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr11:85883800-85890800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:85884600-85888200	Enhancers	Liver	Liver
11	chr11:85884800-85888800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:85885200-85888800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:85885200-85888800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:85885200-85895200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:85885800-85888600	Enhancers	NHEK	skin
16	chr11:85885800-85888800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr11:85886000-85888600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:85886000-85888800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr11:85886000-85888800	Enhancers	HSMM	muscle
20	chr11:85886000-85890200	Weak transcription	Ovary	ovary
21	chr11:85886000-85890800	Enhancers	Muscle Satellite Cultured Cells	--
22	chr11:85886000-85891600	Weak transcription	Brain Substantia Nigra	brain
23	chr11:85886000-85891600	Weak transcription	Fetal Thymus	thymus
24	chr11:85886000-85894000	Weak transcription	Esophagus	oesophagus
25	chr11:85886000-85894000	Weak transcription	Pancreas	Pancrea
26	chr11:85886000-85903000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:85886200-85889800	Weak transcription	Small Intestine	intestine
28	chr11:85886200-85890400	Weak transcription	Lung	lung
29	chr11:85886200-85893800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr11:85886400-85888400	Weak transcription	Psoas Muscle	Psoas
31	chr11:85886400-85888600	Weak transcription	Fetal Intestine Small	intestine
32	chr11:85886400-85890200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr11:85886600-85888400	Weak transcription	Left Ventricle	heart
34	chr11:85886800-85889000	Enhancers	Primary hematopoietic stem cells	blood
35	chr11:85886800-85894000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:85887000-85888200	Enhancers	Brain Hippocampus Middle	brain
37	chr11:85887000-85889600	Weak transcription	NHDF-Ad	bronchial
38	chr11:85887000-85889600	Weak transcription	NHLF	lung
39	chr11:85887000-85890400	Weak transcription	Fetal Muscle Leg	muscle
40	chr11:85887000-85891600	Weak transcription	Brain Angular Gyrus	brain
41	chr11:85887000-85892800	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr11:85887000-85894000	Weak transcription	Right Atrium	heart
43	chr11:85887200-85888800	Flanking Active TSS	Hela-S3	cervix
44	chr11:85887200-85894200	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr11:85887200-85898000	Weak transcription	Brain Anterior Caudate	brain
46	chr11:85887400-85888200	Enhancers	HepG2	liver
47	chr11:85887400-85888800	Enhancers	GM12878-XiMat	blood
48	chr11:85887600-85888800	Enhancers	A549	lung
49	chr11:85887600-85891400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:85887800-85888600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links