Variant report

Variant	rs553409391
Chromosome Location	chr9:96364271-96364272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96363030..96364591-chr9:96367019..96369226,2	MCF-7	breast:
2	chr9:96336608..96339307-chr9:96363926..96365665,2	K562	blood:
3	chr9:96363027..96365894-chr9:96366005..96367741,2	K562	blood:
4	chr9:96353562..96356481-chr9:96362305..96366209,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1040891	chr9:96361529-96397338	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1044461	chr9:96362048-96397338	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv893585	chr9:96363859-96403367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96349000-96365800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:96352400-96366000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:96352400-96369200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:96352400-96384600	Weak transcription	NHLF	lung
5	chr9:96356600-96365600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:96357000-96367000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr9:96357600-96364600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:96358400-96365200	Enhancers	Primary B cells from peripheral blood	blood
9	chr9:96359600-96364400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:96359600-96364400	Enhancers	Left Ventricle	heart
11	chr9:96360000-96365000	Enhancers	Brain Germinal Matrix	brain
12	chr9:96360400-96364400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr9:96360800-96364400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr9:96361000-96364400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr9:96361000-96369400	Weak transcription	Dnd41	blood
16	chr9:96361400-96372000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr9:96361400-96380400	Weak transcription	Fetal Brain Male	brain
18	chr9:96361600-96364800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr9:96361600-96365200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr9:96361600-96379400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:96363000-96365200	Weak transcription	Psoas Muscle	Psoas
22	chr9:96363000-96365600	Weak transcription	Right Atrium	heart
23	chr9:96363000-96366200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:96363000-96368600	Weak transcription	Fetal Lung	lung
25	chr9:96363200-96364800	Weak transcription	Placenta	Placenta
26	chr9:96363200-96365000	Weak transcription	Esophagus	oesophagus
27	chr9:96363200-96365200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr9:96363200-96365600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:96363200-96366000	Weak transcription	Brain Hippocampus Middle	brain
30	chr9:96363200-96366000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr9:96363200-96366600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr9:96363200-96367400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:96363200-96367400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr9:96363200-96367600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr9:96363200-96367600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr9:96363200-96368000	Weak transcription	Adipose Nuclei	Adipose
37	chr9:96363200-96368800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr9:96363200-96369000	Weak transcription	Brain Anterior Caudate	brain
39	chr9:96363200-96374200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr9:96363200-96374600	Weak transcription	Gastric	stomach
41	chr9:96363200-96392000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr9:96363400-96365200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr9:96363400-96366000	Weak transcription	Fetal Heart	heart
44	chr9:96363400-96366600	Strong transcription	Fetal Intestine Small	intestine
45	chr9:96363400-96367400	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr9:96363400-96367600	Weak transcription	Primary B cells from cord blood	blood
47	chr9:96363400-96368600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr9:96363600-96367200	Weak transcription	Fetal Intestine Large	intestine
49	chr9:96363600-96367800	Weak transcription	Primary hematopoietic stem cells	blood
50	chr9:96363600-96367800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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