The 2.0 version of rSNPBase

Variant report

Variant rs553422511
Chromosome Location chr1:95502259-95502260
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95480000-95508800 Weak transcription Skeletal Muscle Female skeletal muscle
2 chr1:95485200-95507000 Weak transcription Fetal Heart heart
3 chr1:95488000-95507000 Weak transcription Ovary ovary
4 chr1:95488200-95505400 Weak transcription Pancreas Pancrea
5 chr1:95488200-95507000 Weak transcription Rectal Smooth Muscle rectum
6 chr1:95488200-95537600 Weak transcription Right Ventricle heart
7 chr1:95488400-95507000 Weak transcription Brain Angular Gyrus brain
8 chr1:95488400-95507800 Weak transcription Brain Substantia Nigra brain
9 chr1:95488600-95507800 Weak transcription Colon Smooth Muscle Colon
10 chr1:95488800-95505400 Weak transcription Small Intestine intestine
11 chr1:95489400-95517200 Weak transcription Aorta Aorta
12 chr1:95491400-95503600 Weak transcription Primary T helper cells PMA-I stimulated --
13 chr1:95491400-95507000 Weak transcription Fetal Kidney kidney
14 chr1:95491600-95529600 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr1:95492600-95507800 Weak transcription Brain Inferior Temporal Lobe brain
16 chr1:95492800-95504000 Weak transcription Fetal Adrenal Gland Adrenal Gland
17 chr1:95492800-95507000 Weak transcription Fetal Stomach stomach
18 chr1:95492800-95508800 Weak transcription Primary T cells from cord blood blood
19 chr1:95493400-95508800 Weak transcription Liver Liver
20 chr1:95495000-95504800 Weak transcription Esophagus oesophagus
21 chr1:95495200-95508000 Weak transcription HepG2 liver
22 chr1:95495200-95508800 Weak transcription Fetal Intestine Small intestine
23 chr1:95495400-95503800 Weak transcription Primary B cells from cord blood blood
24 chr1:95495400-95505800 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr1:95495400-95507000 Weak transcription Fetal Muscle Leg muscle
26 chr1:95497000-95508000 Weak transcription Left Ventricle heart
27 chr1:95499400-95503200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
28 chr1:95499600-95502600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr1:95499800-95502600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
30 chr1:95500400-95502600 Enhancers Breast Myoepithelial Primary Cells Breast
31 chr1:95500600-95507000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr1:95501200-95504600 Weak transcription Placenta Amnion Placenta Amnion
33 chr1:95501200-95505800 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr1:95501200-95505800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
35 chr1:95501200-95505800 Weak transcription HSMMtube muscle
36 chr1:95501400-95506800 Weak transcription NHLF lung
37 chr1:95501600-95504400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr1:95501800-95504400 Weak transcription HMEC breast
39 chr1:95501800-95504400 Weak transcription NHEK skin
40 chr1:95501800-95504800 Weak transcription NH-A brain
41 chr1:95501800-95504800 Weak transcription Osteobl bone
42 chr1:95501800-95505000 Weak transcription HSMM muscle
43 chr1:95501800-95506000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr1:95501800-95506000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr1:95501800-95506000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
46 chr1:95501800-95506800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
47 chr1:95501800-95507000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr1:95501800-95507000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
49 chr1:95502000-95504400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr1:95502000-95507000 Weak transcription Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015