Variant report

Variant	rs553425465
Chromosome Location	chr3:89349909-89349910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv590921	chr3:89294149-89392778	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590922	chr3:89314862-89417064	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590923	chr3:89336417-89417171	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89349000-89350600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:89349200-89350600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr3:89349600-89350000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:89349600-89350200	Enhancers	Primary hematopoietic stem cells	blood
5	chr3:89349600-89350200	Enhancers	Dnd41	blood
6	chr3:89349600-89350200	Enhancers	NH-A	brain
7	chr3:89349600-89350200	Enhancers	NHLF	lung
8	chr3:89349800-89350200	Flanking Active TSS	NHDF-Ad	bronchial
9	chr3:89349800-89350200	Flanking Active TSS	Osteobl	bone
10	chr3:89349800-89350400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:89349800-89350800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:89349800-89350800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:89349800-89350800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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