Variant report

Variant	rs553475850
Chromosome Location	chr11:106023062-106023063
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430428	chr11:106005901-106173046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3431514	chr11:106021392-106023690	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106022600-106023800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr11:106022600-106023800	Enhancers	NH-A	brain
3	chr11:106022600-106024000	Enhancers	NHEK	skin
4	chr11:106022800-106023200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:106022800-106023200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:106022800-106023200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:106022800-106023200	Enhancers	Esophagus	oesophagus
8	chr11:106022800-106023200	Enhancers	Ovary	ovary
9	chr11:106022800-106023200	Enhancers	Pancreas	Pancrea
10	chr11:106022800-106023200	Enhancers	Stomach Smooth Muscle	stomach
11	chr11:106022800-106023200	Flanking Active TSS	HMEC	breast
12	chr11:106022800-106023200	Enhancers	Osteobl	bone
13	chr11:106022800-106023400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:106022800-106023400	Enhancers	Placenta	Placenta
15	chr11:106022800-106023600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:106022800-106024000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:106022800-106024000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:106022800-106024200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:106022800-106024200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:106022800-106025200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:106023000-106024600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:106023000-106024800	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links