Variant report

Variant	rs553482989
Chromosome Location	chr3:177662119-177662120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:177534496..177537087-chr3:177660637..177662503,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231574	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv829805	chr3:177662113-177805003	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177653600-177662200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:177660800-177662200	Enhancers	Dnd41	blood
3	chr3:177661000-177662200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr3:177661000-177662200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr3:177661000-177664000	Enhancers	Primary hematopoietic stem cells	blood
6	chr3:177661000-177664000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr3:177661200-177662200	Enhancers	Primary T cells from cord blood	blood
8	chr3:177661200-177662600	Enhancers	Primary T cells fromperipheralblood	blood
9	chr3:177661200-177662800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr3:177661200-177663400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:177661200-177663800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr3:177661200-177664000	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr3:177661200-177664400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:177661200-177665800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr3:177661400-177663800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:177661400-177664000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr3:177661600-177662200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr3:177661600-177662400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:177661800-177662600	Enhancers	Primary B cells from peripheral blood	blood
20	chr3:177661800-177662600	Enhancers	Fetal Thymus	thymus
21	chr3:177661800-177662600	Enhancers	Spleen	Spleen
22	chr3:177661800-177663200	Enhancers	Primary B cells from cord blood	blood
23	chr3:177661800-177663200	Enhancers	Thymus	Thymus
24	chr3:177661800-177663200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr3:177661800-177664000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr3:177662000-177662200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr3:177662000-177662600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:177662000-177662800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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