Variant report

Variant	rs553488518
Chromosome Location	chr15:43886182-43886183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr15:43885781-43886254	MCF-7	breast:	n/a	chr15:43885973-43885983
2	REST	chr15:43885624-43886689	U87	brain:	n/a	chr15:43885981-43885990 chr15:43886674-43886684 chr15:43886090-43886100 chr15:43885992-43886006
3	REST	chr15:43885498-43886710	H1-hESC	embryonic stem cell:	n/a	chr15:43885981-43885990 chr15:43886674-43886684 chr15:43886090-43886100 chr15:43885992-43886006
4	POLR2A	chr15:43885814-43886456	MCF-7	breast:	n/a	n/a
5	REST	chr15:43885616-43886755	PANC-1	pancreas:	n/a	chr15:43885981-43885990 chr15:43886674-43886684 chr15:43886090-43886100 chr15:43885992-43886006
6	REST	chr15:43885719-43886474	HepG2	liver:	n/a	chr15:43885981-43885990 chr15:43886090-43886100 chr15:43885992-43886006
7	REST	chr15:43885630-43886470	PFSK-1	brain:	n/a	chr15:43885981-43885990 chr15:43886090-43886100 chr15:43885992-43886006
8	REST	chr15:43885595-43887348	SK-N-SH	brain:	n/a	chr15:43885981-43885990 chr15:43886674-43886684 chr15:43886090-43886100 chr15:43885992-43886006
9	USF1	chr15:43885761-43886207	A549	lung:	n/a	chr15:43885819-43885835
10	HEY1	chr15:43885901-43886203	HepG2	liver:	n/a	n/a
11	TEAD4	chr15:43885911-43886528	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr15:43885939-43886427	A549	lung:	n/a	n/a
13	MYC	chr15:43885694-43886306	MCF-7	breast:	n/a	chr15:43885973-43885983
14	POLR2A	chr15:43886122-43886458	ProgFib	skin:	n/a	n/a
15	TAF1	chr15:43885488-43886916	H1-hESC	embryonic stem cell:	n/a	n/a
16	REST	chr15:43885691-43886540	SK-N-SH	brain:	n/a	chr15:43885981-43885990 chr15:43886090-43886100 chr15:43885992-43886006
17	REST	chr15:43885662-43886529	PANC-1	pancreas:	n/a	chr15:43885981-43885990 chr15:43886090-43886100 chr15:43885992-43886006
18	FOXP2	chr15:43886116-43886441	PFSK-1	brain:	n/a	n/a
19	POLR2A	chr15:43885629-43886719	H1-hESC	embryonic stem cell:	n/a	n/a
20	REST	chr15:43885765-43886516	HepG2	liver:	n/a	chr15:43885981-43885990 chr15:43886090-43886100 chr15:43885992-43886006
21	REST	chr15:43885628-43886382	GM12878	blood:	n/a	chr15:43885981-43885990 chr15:43886090-43886100 chr15:43885992-43886006
22	REST	chr15:43885609-43886503	HepG2	liver:	n/a	chr15:43885981-43885990 chr15:43886090-43886100 chr15:43885992-43886006
23	POLR2A	chr15:43885556-43886654	H1-hESC	embryonic stem cell:	n/a	n/a
24	MYC	chr15:43885753-43886188	HepG2	liver:	n/a	chr15:43885973-43885983
25	REST	chr15:43885693-43886710	U87	brain:	n/a	chr15:43885981-43885990 chr15:43886674-43886684 chr15:43886090-43886100 chr15:43885992-43886006
26	POLR2A	chr15:43885802-43886596	MCF-7	breast:	n/a	n/a
27	POLR2A	chr15:43884767-43887283	H1-hESC	embryonic stem cell:	n/a	n/a
28	REST	chr15:43885673-43886467	HepG2	liver:	n/a	chr15:43885981-43885990 chr15:43886090-43886100 chr15:43885992-43886006
29	REST	chr15:43885490-43887444	PFSK-1	brain:	n/a	chr15:43885981-43885990 chr15:43886674-43886684 chr15:43886090-43886100 chr15:43885992-43886006 chr15:43887422-43887430
30	REST	chr15:43885674-43886616	SK-N-SH	brain:	n/a	chr15:43885981-43885990 chr15:43886090-43886100 chr15:43885992-43886006
31	REST	chr15:43885630-43886863	H1-hESC	embryonic stem cell:	n/a	chr15:43885981-43885990 chr15:43886674-43886684 chr15:43886090-43886100 chr15:43885992-43886006
32	REST	chr15:43885620-43886709	GM12878	blood:	n/a	chr15:43885981-43885990 chr15:43886674-43886684 chr15:43886090-43886100 chr15:43885992-43886006
33	POLR2A	chr15:43886011-43886267	A549	lung:	n/a	n/a
34	REST	chr15:43885601-43886589	GM12878	blood:	n/a	chr15:43885981-43885990 chr15:43886090-43886100 chr15:43885992-43886006
35	TAF1	chr15:43885812-43886702	H1-hESC	embryonic stem cell:	n/a	n/a
36	REST	chr15:43885750-43886443	U87	brain:	n/a	chr15:43885981-43885990 chr15:43886090-43886100 chr15:43885992-43886006
37	POLR2A	chr15:43885814-43886566	MCF-7	breast:	n/a	n/a
38	REST	chr15:43885502-43886828	U87	brain:	n/a	chr15:43885981-43885990 chr15:43886674-43886684 chr15:43886090-43886100 chr15:43885992-43886006
39	POLR2A	chr15:43885576-43886862	H1-hESC	embryonic stem cell:	n/a	n/a
40	POLR2A	chr15:43885875-43886810	H1-hESC	embryonic stem cell:	n/a	n/a
41	TEAD4	chr15:43885831-43886515	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
PPIP5K1	TF binding region
CKMT1B	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:42 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	esv1846701	chr15:43759774-44116986	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv437799	chr15:43784000-43989518	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv832988	chr15:43804641-43976862	Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv428304	chr15:43823158-44008580	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	esv2758379	chr15:43823158-44148641	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
7	esv2760028	chr15:43823158-44148641	Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
8	nsv427960	chr15:43823158-44148641	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
9	nsv428633	chr15:43823160-44008580	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv1039949	chr15:43831879-43992646	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
11	esv2757598	chr15:43831923-44058634	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
12	esv2761766	chr15:43834318-44014255	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
13	nsv524910	chr15:43836478-43939642	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
14	nsv904148	chr15:43836478-43961204	Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	nsv904149	chr15:43836478-44011113	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
16	nsv904150	chr15:43836478-44040965	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
17	nsv1039818	chr15:43845410-43988541	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
18	nsv1048041	chr15:43845410-43991014	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
19	esv2760393	chr15:43845422-44024490	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
20	nsv870240	chr15:43851142-43988761	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
21	nsv974568	chr15:43851345-43911094	Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
22	nsv534652	chr15:43851548-43948346	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
23	nsv994950	chr15:43851548-43951301	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
24	nsv904151	chr15:43852043-43938288	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
25	nsv904152	chr15:43852043-43940806	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
26	nsv904153	chr15:43852043-43951118	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
27	nsv904154	chr15:43852043-43961204	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
28	nsv904155	chr15:43852043-43988573	Weak transcription Strong transcription Bivalent Enhancer Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
29	nsv904156	chr15:43852043-44011113	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
30	nsv904157	chr15:43852043-44019592	Bivalent Enhancer Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
31	nsv904158	chr15:43852043-44053617	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
32	esv3413623	chr15:43852060-43973058	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
33	esv13634	chr15:43852144-43988641	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
34	esv3506095	chr15:43853954-43953553	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
35	esv3506097	chr15:43853954-43953553	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
36	nsv1514	chr15:43859260-43996580	Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
37	nsv904159	chr15:43873489-43939642	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
38	nsv904160	chr15:43873489-43940806	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
39	nsv904161	chr15:43873489-43961204	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
40	nsv904162	chr15:43873489-44011113	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
41	nsv904163	chr15:43873489-44023963	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
42	esv2421427	chr15:43885118-43988553	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43851800-43889600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:43871400-43898000	Weak transcription	Gastric	stomach
3	chr15:43885200-43888600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr15:43885200-43889800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr15:43885400-43886200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links