Variant report

Variant	rs553497434
Chromosome Location	chr11:121569633-121569634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121561000-121570200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:121565400-121571000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr11:121566800-121570200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:121567000-121570000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:121567400-121570600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:121567600-121570200	Enhancers	Brain Hippocampus Middle	brain
7	chr11:121567600-121570400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:121567600-121570600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:121567600-121571600	Weak transcription	Right Atrium	heart
10	chr11:121567600-121572400	Enhancers	Brain Substantia Nigra	brain
11	chr11:121567800-121570400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:121567800-121570600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:121568000-121572800	Enhancers	Brain Cingulate Gyrus	brain
14	chr11:121568200-121570400	Weak transcription	Fetal Brain Female	brain
15	chr11:121568200-121570600	Weak transcription	Fetal Kidney	kidney
16	chr11:121568200-121570800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:121568200-121570800	Weak transcription	Fetal Muscle Leg	muscle
18	chr11:121568200-121573600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:121568200-121573600	Weak transcription	Fetal Stomach	stomach
20	chr11:121568200-121576600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:121568400-121570600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:121568800-121570000	Weak transcription	Brain Angular Gyrus	brain
23	chr11:121568800-121570000	Weak transcription	Brain Anterior Caudate	brain
24	chr11:121568800-121570000	Weak transcription	Brain Germinal Matrix	brain
25	chr11:121568800-121570000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:121568800-121570400	Weak transcription	Fetal Brain Male	brain
27	chr11:121569000-121570000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:121569400-121569800	Weak transcription	Fetal Heart	heart

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