Variant report

Variant	rs553527646
Chromosome Location	chr3:151114564-151114565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151106503..151109122-chr3:151113260..151115288,2	K562	blood:
2	chr3:151114494..151116780-chr3:151117358..151119527,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1000355	chr3:151108859-151243835	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151065600-151115200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:151069400-151129800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:151075600-151136400	Weak transcription	Fetal Brain Female	brain
4	chr3:151087600-151116000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:151090200-151142400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:151096000-151129000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:151098800-151143400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:151102200-151148600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:151102600-151132000	Weak transcription	Brain Angular Gyrus	brain
10	chr3:151102800-151136400	Weak transcription	Brain Substantia Nigra	brain
11	chr3:151102800-151150600	Weak transcription	Brain Anterior Caudate	brain
12	chr3:151104200-151139600	Weak transcription	Dnd41	blood
13	chr3:151106000-151130800	Weak transcription	Fetal Intestine Small	intestine
14	chr3:151106000-151134200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:151106000-151154600	Weak transcription	Fetal Muscle Leg	muscle
16	chr3:151106200-151122000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr3:151106200-151128000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr3:151106200-151131200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:151106400-151121400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:151106400-151121400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:151109000-151115200	Weak transcription	Placenta	Placenta
22	chr3:151110000-151116000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr3:151111400-151116400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr3:151112800-151115200	Weak transcription	Gastric	stomach
25	chr3:151112800-151143400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr3:151113000-151116800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr3:151113000-151118200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:151113200-151115200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr3:151113200-151117200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr3:151113200-151142600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr3:151113400-151143600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr3:151113600-151116800	Strong transcription	Primary hematopoietic stem cells	blood
33	chr3:151113800-151116600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr3:151113800-151116800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr3:151113800-151117000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr3:151114000-151120200	Weak transcription	NHLF	lung
37	chr3:151114200-151115200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:151114200-151118200	Weak transcription	NHEK	skin
39	chr3:151114200-151120200	Weak transcription	HMEC	breast

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