Variant report

Variant	rs553537101
Chromosome Location	chr12:32532406-32532407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv2751096	chr12:32280340-32702784	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv558171	chr12:32287259-32559693	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv526183	chr12:32531212-32535815	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	nsv469346	chr12:32531220-32587465	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv558188	chr12:32531220-32587465	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32494200-32533800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr12:32522600-32535800	Weak transcription	Fetal Brain Female	brain
3	chr12:32530600-32534000	Weak transcription	HSMM	muscle
4	chr12:32531000-32533400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr12:32531600-32532800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr12:32531800-32532800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr12:32532000-32532600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr12:32532000-32532600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:32532000-32532800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr12:32532000-32533000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr12:32532200-32532600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr12:32532200-32532800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr12:32532200-32532800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr12:32532200-32532800	Flanking Active TSS	K562	blood
15	chr12:32532400-32532600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:32532400-32532600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr12:32532400-32532600	Active TSS	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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