Variant report

Variant	rs553545995
Chromosome Location	chr10:44439121-44439122
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44431204..44432720-chr10:44436776..44439206,2	MCF-7	breast:
2	chr10:44432874..44435706-chr10:44438627..44440384,2	K562	blood:
3	chr10:44432654..44435706-chr10:44438627..44441733,3	K562	blood:

Variant related genes	Relation type
ENSG00000233395	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3420933	chr10:44437771-44440319	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	esv3402930	chr10:44438096-44440044	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	esv3398356	chr10:44438546-44439644	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44434400-44441600	Enhancers	Fetal Heart	heart
2	chr10:44434600-44439200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:44434600-44439200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr10:44434800-44439200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:44435000-44439600	Enhancers	Fetal Thymus	thymus
6	chr10:44435200-44441200	Enhancers	Left Ventricle	heart
7	chr10:44435400-44441000	Enhancers	Right Atrium	heart
8	chr10:44435800-44439200	Weak transcription	Lung	lung
9	chr10:44436000-44440600	Weak transcription	Osteobl	bone
10	chr10:44436400-44440600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:44437400-44441400	Enhancers	Primary hematopoietic stem cells	blood
12	chr10:44437600-44440200	Weak transcription	Right Ventricle	heart
13	chr10:44437600-44460800	Weak transcription	Gastric	stomach
14	chr10:44438000-44439200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr10:44438000-44439800	Enhancers	GM12878-XiMat	blood
16	chr10:44438400-44439600	Enhancers	Primary B cells from peripheral blood	blood
17	chr10:44438400-44439600	Enhancers	Thymus	Thymus
18	chr10:44438400-44439800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr10:44438600-44439400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:44438600-44440200	Weak transcription	NHDF-Ad	bronchial
21	chr10:44438800-44439200	Weak transcription	Fetal Lung	lung
22	chr10:44438800-44441400	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:44439000-44440800	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links