The 2.0 version of rSNPBase

Variant report

Variant rs553567795
Chromosome Location chr15:38856431-38856432
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:38853600-38856800 Transcr. at gene 5' and 3' Primary T regulatory cells fromperipheralblood blood
2 chr15:38853600-38857600 Flanking Active TSS Primary mononuclear cells fromperipheralblood Blood
3 chr15:38855000-38857000 Active TSS Duodenum Mucosa Duodenum
4 chr15:38855000-38857800 Transcr. at gene 5' and 3' Primary T helper 17 cells PMA-I stimulated --
5 chr15:38855200-38857200 Active TSS Primary T helper memory cells from peripheral blood 2 blood
6 chr15:38855200-38857200 Active TSS Primary T helper naive cells from peripheral blood blood
7 chr15:38855400-38857400 Active TSS Primary T killer memory cells from peripheral blood blood
8 chr15:38855400-38857600 Bivalent/Poised TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr15:38855600-38857200 Active TSS Primary T cells from cord blood blood
10 chr15:38855600-38857200 Active TSS Primary T helper memory cells from peripheral blood 1 blood
11 chr15:38855600-38857800 Active TSS Pancreatic Islets Pancreatic Islet
12 chr15:38855800-38856600 Bivalent/Poised TSS Rectal Smooth Muscle rectum
13 chr15:38855800-38856800 Transcr. at gene 5' and 3' Primary T helper naive cells fromperipheralblood blood
14 chr15:38855800-38857000 Bivalent/Poised TSS Skeletal Muscle Female skeletal muscle
15 chr15:38855800-38857200 Active TSS Small Intestine intestine
16 chr15:38855800-38857600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr15:38855800-38857600 Active TSS Brain Dorsolateral Prefrontal Cortex brain
18 chr15:38856000-38856600 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
19 chr15:38856000-38856600 Flanking Active TSS Duodenum Smooth Muscle Duodenum
20 chr15:38856000-38856800 Flanking Active TSS Liver Liver
21 chr15:38856000-38857000 Bivalent/Poised TSS Stomach Smooth Muscle stomach
22 chr15:38856000-38857200 Bivalent/Poised TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr15:38856000-38857200 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr15:38856000-38857200 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
25 chr15:38856000-38857200 Bivalent/Poised TSS Colon Smooth Muscle Colon
26 chr15:38856000-38857200 Active TSS Gastric stomach
27 chr15:38856000-38857200 Active TSS Sigmoid Colon Sigmoid Colon
28 chr15:38856000-38857200 Active TSS Thymus Thymus
29 chr15:38856000-38857200 Bivalent/Poised TSS Osteobl bone
30 chr15:38856000-38857400 Active TSS Fetal Kidney kidney
31 chr15:38856000-38857600 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
32 chr15:38856000-38857600 Active TSS A549 lung
33 chr15:38856000-38857800 Bivalent/Poised TSS HUES48 Cell Line embryonic stem cell
34 chr15:38856000-38857800 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
35 chr15:38856000-38857800 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
36 chr15:38856200-38856600 Flanking Bivalent TSS/Enh Fetal Muscle Leg muscle
37 chr15:38856200-38856800 Active TSS Primary hematopoietic stem cells blood
38 chr15:38856200-38856800 Flanking Active TSS Placenta Placenta
39 chr15:38856200-38856800 Active TSS Lung lung
40 chr15:38856200-38857000 Active TSS Primary Natural Killer cells fromperipheralblood blood
41 chr15:38856200-38857000 Active TSS Colonic Mucosa Colon
42 chr15:38856200-38857000 Active TSS Hela-S3 cervix
43 chr15:38856200-38857000 Bivalent/Poised TSS HepG2 liver
44 chr15:38856200-38857000 Bivalent/Poised TSS NHLF lung
45 chr15:38856200-38857200 Active TSS H9 Cell Line embryonic stem cell
46 chr15:38856200-38857200 Bivalent/Poised TSS H9 Derived Neuron Cultured Cells ES cell derived
47 chr15:38856200-38857200 Active TSS iPS DF 6.9 Cell Line embryonic stem cell
48 chr15:38856200-38857200 Bivalent/Poised TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr15:38856200-38857200 Active TSS Primary T cells fromperipheralblood blood
50 chr15:38856200-38857200 Active TSS Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015