Variant report

Variant	rs553584392
Chromosome Location	chr5:114749480-114749481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3510970	chr5:114745429-114749915	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3510971	chr5:114745429-114749915	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114749400-114749600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:114749400-114749600	Enhancers	Small Intestine	intestine
3	chr5:114749400-114749800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:114749400-114751200	Enhancers	Fetal Muscle Leg	muscle
5	chr5:114749400-114751200	Enhancers	Left Ventricle	heart
6	chr5:114749400-114751400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:114749400-114751800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:114749400-114752000	Enhancers	Brain Angular Gyrus	brain
9	chr5:114749400-114753200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:114749400-114753200	Enhancers	NHLF	lung
11	chr5:114749400-114756600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links