Variant report

Variant	rs553587379
Chromosome Location	chr16:65160960-65160961
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:105)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:105 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr16:65160880-65161030	K562	blood:	n/a	n/a
2	CTCF	chr16:65160900-65161050	HVMF	connective:	n/a	n/a
3	CTCF	chr16:65160920-65161070	K562	blood:	n/a	n/a
4	CTCF	chr16:65160820-65160970	HCFaa	heart:	n/a	n/a
5	CTCF	chr16:65160840-65160990	Hela-S3	cervix:	n/a	n/a
6	CTCF	chr16:65160887-65161025	NHEK	skin:	n/a	n/a
7	CTCF	chr16:65160900-65161050	GM12864	blood:	n/a	n/a
8	CTCF	chr16:65160840-65160990	HVMF	connective:	n/a	n/a
9	CTCF	chr16:65160860-65161010	AG09309	skin:	n/a	n/a
10	CTCF	chr16:65160840-65160990	HEK293	kidney:	n/a	n/a
11	CTCF	chr16:65160820-65160970	SK-N-SH_RA	brain:	n/a	n/a
12	CTCF	chr16:65160880-65161030	HRE	kidney:	n/a	n/a
13	CTCF	chr16:65160754-65161051	IMR90	lung:	n/a	n/a
14	CTCF	chr16:65160820-65160970	HUVEC	blood vessel:	n/a	n/a
15	CTCF	chr16:65160900-65161050	NHLF	lung:	n/a	n/a
16	CTCF	chr16:65160840-65160990	NHDF-neo	bronchial:	n/a	n/a
17	CTCF	chr16:65160880-65161030	BJ	skin:	n/a	n/a
18	CTCF	chr16:65160880-65161030	NHEK	skin:	n/a	n/a
19	CTCF	chr16:65160860-65161010	GM12801	blood:	n/a	n/a
20	CTCF	chr16:65160840-65160990	HPAF	blood vessel:	n/a	n/a
21	CTCF	chr16:65160880-65161030	HBMEC	blood vessel:	n/a	n/a
22	CTCF	chr16:65160903-65160961	GM10248	blood:	n/a	n/a
23	CTCF	chr16:65160920-65161070	GM12867	blood:	n/a	n/a
24	CTCF	chr16:65160820-65160970	HepG2	liver:	n/a	n/a
25	CTCF	chr16:65160880-65161030	A549	lung:	n/a	n/a
26	CTCF	chr16:65160920-65161070	HEEpiC	esophagus:	n/a	n/a
27	CTCF	chr16:65160840-65160990	GM12866	blood:	n/a	n/a
28	CTCF	chr16:65160900-65161050	HFF	foreskin:	n/a	n/a
29	CTCF	chr16:65160860-65161010	HPF	lung:	n/a	n/a
30	CTCF	chr16:65160880-65161030	GM12870	blood:	n/a	n/a
31	CTCF	chr16:65160860-65161010	GM12872	blood:	n/a	n/a
32	CTCF	chr16:65160860-65161010	GM12875	blood:	n/a	n/a
33	CTCF	chr16:65160880-65161030	GM12873	blood:	n/a	n/a
34	CTCF	chr16:65160860-65161010	Caco-2	colon:	n/a	n/a
35	CTCF	chr16:65160900-65161050	AG04450	lung:	n/a	n/a
36	CTCF	chr16:65160960-65161110	HAc	cerebellar:	n/a	n/a
37	CTCF	chr16:65160880-65161030	WI-38	lung:	n/a	n/a
38	CTCF	chr16:65160840-65160990	HRPEpiC	eye:	n/a	n/a
39	CTCF	chr16:65160880-65161030	GM12872	blood:	n/a	n/a
40	CTCF	chr16:65160900-65161050	RPTEC	kidney:	n/a	n/a
41	RAD21	chr16:65160694-65161105	H1-hESC	embryonic stem cell:	n/a	n/a
42	CTCF	chr16:65160922-65160969	A549	lung:	n/a	n/a
43	CTCF	chr16:65160858-65161011	GM20000	blood:	n/a	n/a
44	RAD21	chr16:65160748-65161086	H1-hESC	embryonic stem cell:	n/a	n/a
45	CTCF	chr16:65160840-65160990	WERI-Rb-1	eye:	n/a	n/a
46	CTCF	chr16:65160860-65161010	AG09319	gingival:	n/a	n/a
47	CTCF	chr16:65160880-65161030	AG09319	gingival:	n/a	n/a
48	ZNF143	chr16:65160765-65161100	H1-hESC	embryonic stem cell:	n/a	n/a
49	CTCF	chr16:65160840-65160990	NHEK	skin:	n/a	n/a
50	CTCF	chr16:65160820-65160970	HCPEpiC	choroid plexus:	n/a	n/a

No data

Variant related genes	Relation type
CDH11	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv34131	chr16:65137094-65379496	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv3328210	chr16:65160551-65164549	Active TSS Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
4	esv3372719	chr16:65160876-65163424	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65160800-65161000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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