Variant report

Variant	rs553590780
Chromosome Location	chr3:138853620-138853621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138853618..138855657-chr3:138955881..138958627,2	K562	blood:
2	chr3:138852662..138855349-chr3:139061361..139063361,3	K562	blood:
3	chr3:138846515..138849332-chr3:138852696..138854714,2	K562	blood:
4	chr3:138852662..138855349-chr3:139061361..139062870,2	K562	blood:
5	chr3:138852328..138855231-chr3:139061265..139063191,2	MCF-7	breast:
6	chr3:138844509..138846014-chr3:138852462..138854010,2	K562	blood:
7	chr3:138847994..138851900-chr3:138852497..138855700,4	K562	blood:

No data

No data

No data

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829736	chr3:138737352-138934758	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3425255	chr3:138852762-138856260	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138849400-138854600	Weak transcription	Pancreas	Pancrea
2	chr3:138853000-138854200	Enhancers	HMEC	breast
3	chr3:138853000-138854800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr3:138853200-138855400	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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