Variant report

Variant	rs553600301
Chromosome Location	chr18:24723798-24723799
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr18:24723562-24723803	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAX	chr18:24723574-24723846	H1-hESC	embryonic stem cell:	n/a	n/a
3	MAX	chr18:24723651-24723851	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
CHST9	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv909473	chr18:24655235-24792075	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv909475	chr18:24687324-24776226	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv909476	chr18:24722839-24779601	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24716400-24727400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr18:24716600-24724000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr18:24716600-24730200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr18:24718400-24727400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:24722400-24726000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr18:24723200-24725600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr18:24723200-24726200	Weak transcription	Fetal Intestine Small	intestine
8	chr18:24723400-24723800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr18:24723400-24723800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr18:24723400-24723800	Weak transcription	Liver	Liver
11	chr18:24723400-24724200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr18:24723600-24723800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr18:24723600-24723800	Flanking Active TSS	HepG2	liver
14	chr18:24723600-24724000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr18:24723600-24724200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr18:24723600-24724200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr18:24723600-24724200	Enhancers	Fetal Intestine Large	intestine
18	chr18:24723600-24724200	Enhancers	Gastric	stomach
19	chr18:24723600-24724200	Enhancers	Psoas Muscle	Psoas
20	chr18:24723600-24724400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr18:24723600-24724600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr18:24723600-24724600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr18:24723600-24724600	Enhancers	Pancreas	Pancrea

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