Variant report

Variant	rs553601682
Chromosome Location	chr17:16491824-16491825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:16487641..16489428-chr17:16491263..16493497,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
6	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv960425	chr17:16490660-16491873	Weak transcription Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16488200-16492000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr17:16488200-16492000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr17:16488200-16492000	Weak transcription	Liver	Liver
4	chr17:16488200-16492000	Weak transcription	Brain Anterior Caudate	brain
5	chr17:16488200-16492000	Weak transcription	Brain Hippocampus Middle	brain
6	chr17:16488200-16492000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr17:16488200-16492000	Weak transcription	Brain Substantia Nigra	brain
8	chr17:16488200-16492000	Weak transcription	Colon Smooth Muscle	Colon
9	chr17:16488200-16492000	Weak transcription	Psoas Muscle	Psoas
10	chr17:16488200-16492000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr17:16488200-16492000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr17:16488200-16492200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr17:16488200-16492200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr17:16488200-16492200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr17:16488200-16492200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr17:16488200-16492200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr17:16488200-16492200	Weak transcription	Placenta	Placenta
18	chr17:16488200-16492200	Weak transcription	Left Ventricle	heart
19	chr17:16488200-16492200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr17:16488200-16492200	Weak transcription	Right Ventricle	heart
21	chr17:16488200-16492200	Weak transcription	HMEC	breast
22	chr17:16488400-16492000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr17:16488400-16492000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr17:16489200-16492200	Weak transcription	Lung	lung
25	chr17:16489600-16492000	Weak transcription	Adipose Nuclei	Adipose
26	chr17:16491800-16492000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
27	chr17:16491800-16492200	Enhancers	Pancreas	Pancrea
28	chr17:16491800-16493000	Active TSS	Brain Inferior Temporal Lobe	brain

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