Variant report

Variant	rs553601946
Chromosome Location	chr7:101208038-101208039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101207965..101209956-chr7:101246300..101248561,2	MCF-7	breast:
2	chr7:101206668..101209000-chr7:101457248..101459905,2	MCF-7	breast:
3	chr7:101207656..101210321-chr7:101214557..101217870,3	MCF-7	breast:
4	chr7:101189298..101191997-chr7:101207833..101210314,2	MCF-7	breast:
5	chr7:101206824..101211807-chr7:101212192..101215584,4	K562	blood:

Variant related genes	Relation type
ENSG00000233123	Chromatin interaction
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv888821	chr7:101091470-101311540	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv831078	chr7:101094945-101257486	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv888822	chr7:101105017-101330734	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv888824	chr7:101109073-101330734	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv1796652	chr7:101156017-101219459	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv888825	chr7:101168283-101330734	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv818542	chr7:101202840-101208943	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv3325020	chr7:101206682-101209580	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101194400-101208200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:101206000-101208400	Bivalent Enhancer	Adipose Nuclei	Adipose
3	chr7:101206400-101208600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr7:101206400-101209000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:101206600-101208600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:101206800-101208400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr7:101206800-101208600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr7:101207000-101208200	Enhancers	Spleen	Spleen
9	chr7:101207000-101208400	Enhancers	Lung	lung
10	chr7:101207000-101208400	Enhancers	A549	lung
11	chr7:101207000-101208600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr7:101207200-101208400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:101207200-101208400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr7:101207400-101208200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
15	chr7:101207400-101208400	Enhancers	Primary hematopoietic stem cells	blood
16	chr7:101207600-101208200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:101207600-101208200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr7:101207600-101208400	Enhancers	Gastric	stomach
19	chr7:101207600-101208400	Enhancers	Pancreas	Pancrea
20	chr7:101207600-101208600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr7:101207600-101208600	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
22	chr7:101207600-101209000	Enhancers	Fetal Muscle Leg	muscle
23	chr7:101207800-101208200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr7:101207800-101208200	Enhancers	Colonic Mucosa	Colon
25	chr7:101207800-101208400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr7:101208000-101208200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:101208000-101208200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr7:101208000-101208200	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr7:101208000-101208400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
30	chr7:101208000-101208400	ZNF genes & repeats	Esophagus	oesophagus
31	chr7:101208000-101208400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
32	chr7:101208000-101208400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links