Variant report

Variant	rs553621543
Chromosome Location	chr11:9726098-9726099
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1045550	chr11:9718324-9790088	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	esv3324615	chr11:9725376-9729874	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3353971	chr11:9725976-9728974	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3360855	chr11:9726076-9728874	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9710200-9758400	Weak transcription	Psoas Muscle	Psoas
2	chr11:9710400-9732800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:9711200-9732800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:9711400-9754400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:9711600-9729600	Weak transcription	Fetal Heart	heart
6	chr11:9711600-9730200	Weak transcription	Right Ventricle	heart
7	chr11:9711600-9731400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:9711600-9732800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:9711600-9733200	Weak transcription	Aorta	Aorta
10	chr11:9711600-9736600	Weak transcription	Gastric	stomach
11	chr11:9713600-9730000	Weak transcription	NH-A	brain
12	chr11:9715400-9730200	Weak transcription	Pancreas	Pancrea
13	chr11:9715800-9731200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:9715800-9732800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:9716000-9730200	Weak transcription	Esophagus	oesophagus
16	chr11:9716000-9736600	Weak transcription	NHEK	skin
17	chr11:9716000-9738000	Weak transcription	HMEC	breast
18	chr11:9717600-9731200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:9717600-9733000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:9717600-9736600	Weak transcription	Fetal Stomach	stomach
21	chr11:9717600-9738800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:9717600-9739200	Weak transcription	NHLF	lung
23	chr11:9717600-9751000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:9717600-9751000	Weak transcription	Ovary	ovary
25	chr11:9717800-9730200	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:9717800-9731000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:9717800-9731600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:9717800-9736200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr11:9717800-9736200	Weak transcription	Fetal Intestine Large	intestine
30	chr11:9718200-9731200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr11:9718200-9749600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:9718400-9731000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:9718800-9726200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:9719600-9731000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr11:9719600-9736400	Weak transcription	Placenta	Placenta
36	chr11:9720200-9730200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:9720200-9730400	Weak transcription	Lung	lung
38	chr11:9720200-9735000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:9722000-9732800	Weak transcription	Right Atrium	heart
40	chr11:9722400-9733000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr11:9722400-9733000	Weak transcription	Hela-S3	cervix
42	chr11:9723800-9730000	Weak transcription	Colon Smooth Muscle	Colon
43	chr11:9723800-9732800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr11:9723800-9732800	Weak transcription	Fetal Kidney	kidney
45	chr11:9724000-9726400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:9724000-9726400	Enhancers	Rectal Mucosa Donor 29	rectum
47	chr11:9724000-9739400	Weak transcription	Fetal Lung	lung
48	chr11:9724200-9726400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:9724200-9726600	Genic enhancers	Primary B cells from cord blood	blood
50	chr11:9724200-9726600	Genic enhancers	Primary B cells from peripheral blood	blood

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