Variant report

Variant	rs553640206
Chromosome Location	chr11:59015579-59015580
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv1821250	chr11:58925860-59059179	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv3351601	chr11:58979308-59052763	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3381199	chr11:59015574-59068938	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59012200-59019200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:59013200-59017000	Enhancers	Primary B cells from cord blood	blood
3	chr11:59013200-59017400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr11:59013400-59016600	Enhancers	Hela-S3	cervix
5	chr11:59014000-59016200	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr11:59014200-59015600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:59014200-59015800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:59014200-59016400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:59014200-59016600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:59014400-59015600	Enhancers	Right Atrium	heart
11	chr11:59014400-59015800	Enhancers	HMEC	breast
12	chr11:59014400-59016000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr11:59014400-59016400	Enhancers	Primary T cells from cord blood	blood
14	chr11:59014400-59016400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:59014400-59016600	Enhancers	Primary T cells fromperipheralblood	blood
16	chr11:59014600-59015600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr11:59014600-59015800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:59014600-59015800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr11:59014800-59016000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:59014800-59016400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr11:59015000-59015600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:59015000-59015800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:59015000-59016200	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr11:59015000-59016400	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr11:59015200-59015600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr11:59015200-59016000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:59015200-59016000	Weak transcription	NHLF	lung
28	chr11:59015200-59016600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr11:59015200-59016600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:59015400-59015600	Enhancers	Lung	lung
31	chr11:59015400-59015600	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr11:59015400-59016000	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr11:59015400-59016000	Enhancers	Placenta	Placenta

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