Variant report

Variant	rs553656054
Chromosome Location	chr3:142649323-142649324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142646642..142649526-chr3:142698075..142700491,2	K562	blood:
2	chr3:142605802..142607815-chr3:142647125..142649586,2	K562	blood:
3	chr3:142647321..142650179-chr3:142650476..142652282,2	K562	blood:
4	chr3:142547239..142548107-chr3:142649094..142649676,4	MCF-7	breast:
5	chr3:142646363..142649526-chr3:142696686..142700491,3	K562	blood:
6	chr3:142646198..142649635-chr3:142718631..142722027,3	K562	blood:
7	chr3:142644210..142646377-chr3:142646529..142649534,4	K562	blood:
8	chr3:142647858..142649587-chr3:142722010..142723590,2	K562	blood:
9	chr3:142647572..142650450-chr3:142712421..142714563,2	K562	blood:
10	chr3:142648477..142650076-chr3:142657303..142659740,2	K562	blood:
11	chr3:142644725..142647304-chr3:142647371..142649534,2	K562	blood:
12	chr3:142313909..142316781-chr3:142649039..142651216,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000243818	Chromatin interaction
ENSG00000120756	Chromatin interaction
ENSG00000163710	Chromatin interaction
ENSG00000163714	Chromatin interaction
ENSG00000268129	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv4040	chr3:142649146-142675752	Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142647800-142649600	Enhancers	K562	blood
2	chr3:142648200-142649600	Enhancers	Liver	Liver
3	chr3:142648400-142650200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:142648800-142649600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr3:142648800-142651200	Enhancers	HepG2	liver
6	chr3:142649200-142649600	Enhancers	Stomach Mucosa	stomach
7	chr3:142649200-142649600	Enhancers	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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