Variant report

Variant	rs553663352
Chromosome Location	chr15:78436677-78436678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv948437	chr15:78435527-78504662	Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78424600-78440800	Weak transcription	HSMMtube	muscle
2	chr15:78425000-78440600	Weak transcription	Fetal Stomach	stomach
3	chr15:78425400-78436800	Weak transcription	Adipose Nuclei	Adipose
4	chr15:78426000-78440200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:78427200-78438600	Weak transcription	Placenta	Placenta
6	chr15:78427200-78439200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:78432600-78440200	Weak transcription	Small Intestine	intestine
8	chr15:78433000-78440600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr15:78433600-78440400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr15:78433800-78440200	Weak transcription	Right Ventricle	heart
11	chr15:78434000-78439800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr15:78434800-78439200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:78435200-78438600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr15:78435200-78438800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:78435200-78438800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:78435200-78440400	Weak transcription	HepG2	liver
17	chr15:78435400-78438400	Weak transcription	Fetal Intestine Large	intestine
18	chr15:78435400-78438400	Weak transcription	Fetal Intestine Small	intestine
19	chr15:78436000-78440600	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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