Variant report

Variant	rs553666845
Chromosome Location	chr11:63236151-63236152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv972926	chr11:63235663-63258845	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63227600-63246200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:63227800-63252600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:63228000-63237800	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:63228400-63238000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:63231200-63246200	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:63231600-63247400	Weak transcription	Pancreas	Pancrea
7	chr11:63233800-63236600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:63234200-63236400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:63234200-63244400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:63234800-63239000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:63235000-63241800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:63235200-63236400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:63236000-63237600	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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