Variant report

Variant	rs553669957
Chromosome Location	chr15:42304712-42304713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr15:42304420-42304802	HepG2	liver:	n/a	chr15:42304627-42304638
2	STAT3	chr15:42304515-42304715	MCF10A-Er-Src	breast:	n/a	n/a
3	CEBPB	chr15:42304404-42304735	HepG2	liver:	n/a	chr15:42304627-42304638
4	STAT3	chr15:42304524-42304718	MCF10A-Er-Src	breast:	n/a	n/a
5	ELF1	chr15:42304375-42304723	HepG2	liver:	n/a	chr15:42304529-42304540
6	MYC	chr15:42304514-42304833	MCF10A-Er-Src	breast:	n/a	n/a
7	ZEB1	chr15:42304275-42304892	HepG2	liver:	n/a	chr15:42304578-42304589
8	STAT3	chr15:42304655-42304712	MCF10A-Er-Src	breast:	n/a	n/a
9	POLR2A	chr15:42304591-42304810	MCF10A-Er-Src	breast:	n/a	n/a
10	MYC	chr15:42304430-42304809	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
PLA2G4E	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1038933	chr15:42138456-42309087	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
4	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv1054728	chr15:42177772-42310009	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
8	nsv569235	chr15:42304628-42326259	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42290400-42310400	Weak transcription	Right Atrium	heart
2	chr15:42301800-42306000	Enhancers	Fetal Intestine Small	intestine
3	chr15:42302000-42305400	Enhancers	Placenta	Placenta
4	chr15:42302000-42306000	Enhancers	Fetal Intestine Large	intestine
5	chr15:42303600-42304800	Enhancers	GM12878-XiMat	blood
6	chr15:42303600-42305000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:42303600-42309000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr15:42303800-42305400	Weak transcription	Lung	lung
9	chr15:42304000-42305000	Enhancers	Duodenum Mucosa	Duodenum
10	chr15:42304000-42305000	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr15:42304000-42305400	Enhancers	Pancreas	Pancrea
12	chr15:42304000-42305600	Enhancers	Stomach Mucosa	stomach
13	chr15:42304200-42304800	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr15:42304200-42305000	Enhancers	Colonic Mucosa	Colon
15	chr15:42304200-42305400	Enhancers	Esophagus	oesophagus
16	chr15:42304200-42305400	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr15:42304400-42305200	Enhancers	HepG2	liver
18	chr15:42304400-42305600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:42304600-42304800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:42304600-42305200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:42304600-42305400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:42304600-42305400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:42304600-42305800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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