Variant report

Variant	rs553690551
Chromosome Location	chr9:102973217-102973218
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	esv2761274	chr9:102972481-102993911	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102940400-102978000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:102953000-102976800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:102953800-102977600	Weak transcription	Fetal Stomach	stomach
4	chr9:102954600-102978000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:102955000-102988400	Weak transcription	Dnd41	blood
6	chr9:102955200-102999600	Weak transcription	Lung	lung
7	chr9:102956200-102983400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:102957400-102977800	Weak transcription	Aorta	Aorta
9	chr9:102958800-103014400	Weak transcription	Hela-S3	cervix
10	chr9:102959000-102984400	Weak transcription	HepG2	liver
11	chr9:102959800-102977600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:102959800-102977600	Weak transcription	Ovary	ovary
13	chr9:102959800-102994600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:102960800-102978000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:102962000-102989200	Weak transcription	Fetal Lung	lung
16	chr9:102964800-102988400	Weak transcription	Fetal Intestine Large	intestine
17	chr9:102965400-102976400	Weak transcription	Fetal Heart	heart
18	chr9:102967600-102975600	Weak transcription	HSMM	muscle
19	chr9:102967600-102977800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:102967600-102978400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:102967600-102988600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr9:102969800-102978600	Weak transcription	Right Ventricle	heart
23	chr9:102972000-102988400	Weak transcription	Fetal Intestine Small	intestine
24	chr9:102972200-102973400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr9:102972400-102973400	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr9:102972400-102977600	Weak transcription	Left Ventricle	heart
27	chr9:102972400-102988400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr9:102972400-102991400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr9:102972400-103017200	Weak transcription	Spleen	Spleen
30	chr9:102972400-103035200	Weak transcription	Esophagus	oesophagus
31	chr9:102972600-102973400	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr9:102972600-102976000	Weak transcription	Primary T cells from cord blood	blood
33	chr9:102972600-102976400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:102972600-102977200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr9:102972600-102977800	Weak transcription	Fetal Kidney	kidney
36	chr9:102972600-102978800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr9:102972600-102988000	Weak transcription	Liver	Liver
38	chr9:102972600-102988400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr9:102972600-102988600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr9:102972600-102998800	Weak transcription	Thymus	Thymus
41	chr9:102972600-103027200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr9:102972600-103046600	Weak transcription	Psoas Muscle	Psoas
43	chr9:102972800-102973800	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr9:102972800-102977800	Weak transcription	Primary B cells from cord blood	blood
45	chr9:102972800-102977800	Weak transcription	Adipose Nuclei	Adipose
46	chr9:102972800-102986600	Weak transcription	Primary B cells from peripheral blood	blood
47	chr9:102972800-102987800	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr9:102972800-102988400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr9:102972800-102989000	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr9:102973000-102973800	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links