Variant report

Variant	rs553693459
Chromosome Location	chr15:51574747-51574748
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr15:51574484-51574815	GM12878	blood:	n/a	n/a
2	TCF3	chr15:51574563-51574831	GM12878	blood:	n/a	n/a
3	TCF12	chr15:51574542-51574815	GM12878	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:51568163..51571047-chr15:51573352..51576170,3	MCF-7	breast:
2	chr15:51573458..51575048-chr15:51673491..51675129,2	MCF-7	breast:
3	chr15:51573015..51575119-chr15:51672522..51674124,19	MCF-7	breast:
4	chr15:51574618..51575812-chr15:51673135..51674386,4	MCF-7	breast:
5	chr15:51572199..51575130-chr15:51658067..51661201,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259701	TF binding region
CYP19A1	TF binding region
ENSG00000137869	Chromatin interaction
ENSG00000259194	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	esv34532	chr15:51276128-51752856	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv2758382	chr15:51282257-51830339	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	esv2760031	chr15:51282257-51830339	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	esv2757600	chr15:51352249-51783981	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	nsv904215	chr15:51542193-51673125	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
9	esv3398984	chr15:51574559-51577866	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51572600-51575200	Genic enhancers	Placenta	Placenta
2	chr15:51573000-51574800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:51573200-51575000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr15:51573400-51574800	Enhancers	Adipose Nuclei	Adipose
5	chr15:51573400-51575000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:51573400-51575000	Enhancers	Fetal Muscle Leg	muscle
7	chr15:51573400-51575200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:51573400-51575400	Enhancers	Brain Hippocampus Middle	brain
9	chr15:51573600-51574800	Weak transcription	Brain Substantia Nigra	brain
10	chr15:51573600-51575000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:51573600-51575000	Enhancers	GM12878-XiMat	blood
12	chr15:51573800-51574800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:51573800-51574800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr15:51573800-51575000	Enhancers	NHDF-Ad	bronchial
15	chr15:51574000-51575000	Enhancers	HepG2	liver
16	chr15:51574000-51575200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:51574000-51575200	Enhancers	Stomach Mucosa	stomach
18	chr15:51574400-51574800	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr15:51574400-51575000	Enhancers	Duodenum Mucosa	Duodenum
20	chr15:51574400-51575000	Enhancers	Spleen	Spleen
21	chr15:51574400-51575400	Enhancers	Brain Angular Gyrus	brain
22	chr15:51574400-51576200	Enhancers	Primary B cells from peripheral blood	blood
23	chr15:51574600-51575000	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr15:51574600-51575000	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr15:51574600-51576600	Enhancers	Primary monocytes fromperipheralblood	blood

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