Variant report
| Variant | rs553723 |
|---|---|
| Chromosome Location | chr6:49689997-49689998 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-C6orf141-4 | chr6:49689644-49691720 | NONHSAT113063 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1089535 | 0.84[ASN][1000 genomes] |
| rs173398 | 0.84[ASN][1000 genomes] |
| rs187360 | 0.95[ASN][1000 genomes] |
| rs189664 | 0.83[ASN][1000 genomes] |
| rs2248263 | 0.84[ASN][1000 genomes] |
| rs360549 | 0.83[ASN][1000 genomes] |
| rs360550 | 0.83[ASN][1000 genomes] |
| rs360554 | 0.92[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs495335 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs500423 | 0.95[ASN][1000 genomes] |
| rs503549 | 0.84[ASN][1000 genomes] |
| rs508949 | 0.84[ASN][1000 genomes] |
| rs509699 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs515257 | 0.84[ASN][1000 genomes] |
| rs517705 | 0.95[ASN][1000 genomes] |
| rs547848 | 0.95[ASN][1000 genomes] |
| rs547972 | 0.95[ASN][1000 genomes] |
| rs561127 | 0.85[ASN][1000 genomes] |
| rs602273 | 0.90[ASN][1000 genomes] |
| rs609156 | 0.84[ASN][1000 genomes] |
| rs662874 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs699954 | 0.95[ASN][1000 genomes] |
| rs699955 | 0.83[ASN][1000 genomes] |
| rs699957 | 0.95[ASN][1000 genomes] |
| rs699958 | 0.95[ASN][1000 genomes] |
| rs699966 | 0.97[ASN][1000 genomes] |
| rs699976 | 0.81[ASN][1000 genomes] |
| rs699983 | 0.84[ASN][1000 genomes] |
| rs699987 | 0.84[ASN][1000 genomes] |
| rs699989 | 0.84[ASN][1000 genomes] |
| rs780442 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv933833 | chr6:49515134-49961765 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:49681800-49694200 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
