Variant report

Variant	rs553736586
Chromosome Location	chr11:121116164-121116165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042295	chr11:121072853-121177079	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv898424	chr11:121108865-121206354	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv898425	chr11:121115206-121215237	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121107800-121116800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:121108600-121116400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:121109400-121117000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:121112800-121116600	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:121112800-121116800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:121112800-121116800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:121112800-121116800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:121113000-121116800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:121113200-121116600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:121113200-121116800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:121113200-121116800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:121113200-121117000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:121113200-121120200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:121113400-121117600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:121114400-121117000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:121114400-121119200	Weak transcription	HSMMtube	muscle
17	chr11:121114400-121120400	Weak transcription	HSMM	muscle
18	chr11:121115600-121116200	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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