Variant report

Variant	rs553743278
Chromosome Location	chr15:83124512-83124513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB33	chr15:83124324-83125097	K562	blood:	n/a	n/a
2	SIX5	chr15:83124495-83125142	K562	blood:	n/a	n/a
3	IRF4	chr15:83124327-83124867	GM12878	blood:	n/a	n/a
4	PAX5	chr15:83124355-83124885	GM12878	blood:	n/a	n/a
5	HEY1	chr15:83124450-83125036	K562	blood:	n/a	n/a
6	PAX5	chr15:83124476-83124729	GM12878	blood:	n/a	n/a
7	ZBTB33	chr15:83124415-83124806	K562	blood:	n/a	n/a
8	POU2F2	chr15:83124385-83125130	GM12878	blood:	n/a	n/a
9	GATA2	chr15:83124336-83127299	K562	blood:	n/a	chr15:83126541-83126553 chr15:83126544-83126554 chr15:83126542-83126551 chr15:83126544-83126551 chr15:83127057-83127078 chr15:83125248-83125259 chr15:83127220-83127228 chr15:83126542-83126552

Variant related genes	Relation type
CSPG4P10	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820106	chr15:82606410-83202155	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1053566	chr15:82606410-83204498	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv1046321	chr15:82680087-83202155	Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv427965	chr15:82741381-83310525	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv428309	chr15:82741381-83310525	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	esv2758391	chr15:82879646-83310525	Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	esv2760046	chr15:82879646-83310525	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv833069	chr15:82936700-83159994	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv904448	chr15:82952273-83146206	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
10	esv3501526	chr15:82953997-83163195	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
11	esv3501527	chr15:82953997-83163195	Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
12	esv3511106	chr15:82954147-83150695	Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
13	esv3511107	chr15:82954147-83150695	Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
14	esv3312434	chr15:82954397-83162595	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
15	esv3312435	chr15:82954397-83162595	Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
16	esv1823691	chr15:82957249-83126316	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
17	esv3485636	chr15:82957847-83162945	Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
18	esv3485637	chr15:82957847-83162945	Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
19	nsv482552	chr15:82970501-83140071	Active TSS	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
20	esv3521494	chr15:83038997-83162795	Inactive region	TF binding region lncRNA	8 gene(s)	inside rSNPs	diseases
21	esv3521495	chr15:83038997-83162795	Inactive region	TF binding region lncRNA	8 gene(s)	inside rSNPs	diseases
22	nsv428645	chr15:83069951-83227151	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
23	nsv984102	chr15:83073184-83201789	Enhancers	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
24	nsv469699	chr15:83088908-83207713	Enhancers	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
25	nsv471686	chr15:83088909-83207713	Enhancers	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
26	esv10828	chr15:83096440-83219640	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
27	nsv9286	chr15:83097712-83186023	Enhancers	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
28	nsv1035899	chr15:83108446-83315731	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
29	nsv977801	chr15:83117244-83149226	Inactive region	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
30	nsv833071	chr15:83123646-83310510	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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