Variant report

Variant	rs553748728
Chromosome Location	chr20:24388290-24388291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3521655	chr20:24388002-24390600	Bivalent Enhancer Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24384000-24390200	Weak transcription	Fetal Brain Female	brain
2	chr20:24386400-24388400	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr20:24386400-24388600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr20:24386400-24388600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr20:24386600-24388400	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr20:24386600-24388400	Enhancers	HMEC	breast
7	chr20:24386800-24388400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr20:24387400-24388400	Enhancers	Brain Substantia Nigra	brain
9	chr20:24387400-24388400	Enhancers	Fetal Kidney	kidney
10	chr20:24387400-24388400	Enhancers	Right Atrium	heart
11	chr20:24387600-24388400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr20:24387600-24388600	Enhancers	Primary T cells from cord blood	blood
13	chr20:24387600-24388600	Enhancers	Primary T cells fromperipheralblood	blood
14	chr20:24387600-24388800	Enhancers	Lung	lung
15	chr20:24387800-24392400	Weak transcription	Fetal Thymus	thymus
16	chr20:24388000-24388600	Enhancers	Brain Angular Gyrus	brain
17	chr20:24388200-24388400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr20:24388200-24388600	Enhancers	Aorta	Aorta
19	chr20:24388200-24390000	Weak transcription	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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